Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_396

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_395 and Pf6N2E2_396 are separated by 684 nucleotidesPf6N2E2_396 and Pf6N2E2_397 are separated by 162 nucleotides Pf6N2E2_395 - Glutathione S-transferase (EC 2.5.1.18), at 463,397 to 463,828 _395 Pf6N2E2_396 - hypothetical protein, at 464,513 to 464,920 _396 Pf6N2E2_397 - Large exoproteins involved in heme utilization or adhesion, at 465,083 to 467,020 _397 Position (kb) 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 463.558 kb on + strand, within Pf6N2E2_395at 463.602 kb on + strand, within Pf6N2E2_395at 463.603 kb on - strand, within Pf6N2E2_395at 463.697 kb on + strand, within Pf6N2E2_395at 463.698 kb on - strand, within Pf6N2E2_395at 463.731 kb on - strand, within Pf6N2E2_395at 463.795 kb on - strandat 463.795 kb on - strandat 463.882 kb on - strandat 463.924 kb on - strandat 463.957 kb on - strandat 464.009 kb on - strandat 464.009 kb on - strandat 464.475 kb on + strandat 464.476 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.512 kb on - strandat 464.512 kb on - strandat 464.532 kb on + strandat 464.532 kb on + strandat 464.533 kb on - strandat 464.533 kb on - strandat 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.690 kb on + strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.846 kb on + strand, within Pf6N2E2_396at 464.857 kb on + strand, within Pf6N2E2_396at 464.900 kb on + strandat 464.900 kb on + strandat 464.901 kb on - strandat 464.901 kb on - strandat 464.901 kb on - strandat 464.913 kb on + strandat 464.913 kb on + strandat 464.914 kb on - strandat 464.914 kb on - strandat 464.914 kb on - strandat 464.918 kb on + strandat 464.918 kb on + strandat 464.918 kb on + strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.930 kb on + strandat 465.034 kb on + strandat 465.035 kb on - strandat 465.084 kb on + strandat 465.084 kb on + strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.225 kb on + strandat 465.225 kb on + strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.348 kb on + strand, within Pf6N2E2_397at 465.391 kb on - strand, within Pf6N2E2_397at 465.404 kb on + strand, within Pf6N2E2_397at 465.404 kb on + strand, within Pf6N2E2_397at 465.446 kb on + strand, within Pf6N2E2_397at 465.446 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.551 kb on + strand, within Pf6N2E2_397at 465.552 kb on - strand, within Pf6N2E2_397at 465.691 kb on - strand, within Pf6N2E2_397at 465.820 kb on + strand, within Pf6N2E2_397at 465.843 kb on + strand, within Pf6N2E2_397at 465.874 kb on + strand, within Pf6N2E2_397at 465.875 kb on - strand, within Pf6N2E2_397

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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463,558 + Pf6N2E2_395 0.37 +1.2
463,602 + Pf6N2E2_395 0.47 +0.2
463,603 - Pf6N2E2_395 0.48 -2.1
463,697 + Pf6N2E2_395 0.69 -0.8
463,698 - Pf6N2E2_395 0.70 +0.5
463,731 - Pf6N2E2_395 0.77 -0.0
463,795 - -2.0
463,795 - -1.1
463,882 - +1.9
463,924 - -2.3
463,957 - -1.8
464,009 - +0.1
464,009 - -1.3
464,475 + +0.3
464,476 - -0.7
464,508 - +0.1
464,508 - +0.4
464,508 - -2.9
464,508 - -1.3
464,511 + -1.9
464,511 + -0.3
464,511 + +0.7
464,511 + -0.6
464,512 - -0.2
464,512 - +0.1
464,532 + +2.2
464,532 + -1.3
464,533 - +0.3
464,533 - +1.4
464,594 - Pf6N2E2_396 0.20 -0.0
464,594 - Pf6N2E2_396 0.20 +0.1
464,594 - Pf6N2E2_396 0.20 -0.6
464,690 + Pf6N2E2_396 0.43 -0.6
464,719 - Pf6N2E2_396 0.50 -2.9
464,719 - Pf6N2E2_396 0.50 -2.4
464,812 + Pf6N2E2_396 0.73 -0.6
464,812 + Pf6N2E2_396 0.73 +1.1
464,812 + Pf6N2E2_396 0.73 -0.2
464,846 + Pf6N2E2_396 0.82 -1.9
464,857 + Pf6N2E2_396 0.84 -0.6
464,900 + +1.9
464,900 + -0.9
464,901 - +0.4
464,901 - -1.0
464,901 - -1.5
464,913 + +0.1
464,913 + +0.5
464,914 - -1.1
464,914 - +0.8
464,914 - -0.3
464,918 + -0.1
464,918 + +0.9
464,918 + +0.5
464,919 - -1.8
464,919 - +0.7
464,919 - +0.7
464,919 - +2.3
464,919 - +0.5
464,919 - +0.2
464,919 - +2.5
464,930 + -1.5
465,034 + -2.5
465,035 - +1.9
465,084 + -2.6
465,084 + +0.1
465,085 - +0.3
465,085 - -2.7
465,085 - -1.9
465,085 - +0.7
465,085 - +1.1
465,225 + +1.6
465,225 + -0.6
465,226 - -0.3
465,226 - +1.0
465,226 - -0.7
465,226 - -1.3
465,226 - -2.9
465,226 - -0.8
465,226 - -0.2
465,348 + Pf6N2E2_397 0.14 +1.6
465,391 - Pf6N2E2_397 0.16 -1.3
465,404 + Pf6N2E2_397 0.17 -0.1
465,404 + Pf6N2E2_397 0.17 +0.3
465,446 + Pf6N2E2_397 0.19 -0.2
465,446 + Pf6N2E2_397 0.19 +0.4
465,473 + Pf6N2E2_397 0.20 -1.9
465,473 + Pf6N2E2_397 0.20 -0.4
465,473 + Pf6N2E2_397 0.20 +0.2
465,473 + Pf6N2E2_397 0.20 +1.6
465,474 - Pf6N2E2_397 0.20 +1.2
465,474 - Pf6N2E2_397 0.20 -1.9
465,474 - Pf6N2E2_397 0.20 -0.5
465,474 - Pf6N2E2_397 0.20 +2.3
465,474 - Pf6N2E2_397 0.20 -0.8
465,474 - Pf6N2E2_397 0.20 +0.1
465,474 - Pf6N2E2_397 0.20 -0.6
465,551 + Pf6N2E2_397 0.24 -0.5
465,552 - Pf6N2E2_397 0.24 -1.6
465,691 - Pf6N2E2_397 0.31 -0.7
465,820 + Pf6N2E2_397 0.38 +2.4
465,843 + Pf6N2E2_397 0.39 +1.6
465,874 + Pf6N2E2_397 0.41 +1.3
465,875 - Pf6N2E2_397 0.41 -0.3

Or see this region's nucleotide sequence