Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_360

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_359 and Pf6N2E2_360 are separated by 86 nucleotidesPf6N2E2_360 and Pf6N2E2_361 are separated by 43 nucleotides Pf6N2E2_359 - Opine oxidase subunit B, at 424,080 to 425,354 _359 Pf6N2E2_360 - ABC peptide transporter, periplasmic ligand binding protein, at 425,441 to 427,084 _360 Pf6N2E2_361 - Peptide ABC transporter, permease protein, at 427,128 to 428,084 _361 Position (kb) 425 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 424.477 kb on - strandat 424.861 kb on + strand, within Pf6N2E2_359at 424.862 kb on - strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.908 kb on + strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.909 kb on - strand, within Pf6N2E2_359at 424.935 kb on + strand, within Pf6N2E2_359at 424.936 kb on - strand, within Pf6N2E2_359at 425.085 kb on + strand, within Pf6N2E2_359at 425.085 kb on + strand, within Pf6N2E2_359at 425.325 kb on + strandat 425.328 kb on + strandat 425.344 kb on - strandat 425.414 kb on + strandat 425.432 kb on - strandat 425.735 kb on + strand, within Pf6N2E2_360at 425.736 kb on - strand, within Pf6N2E2_360at 425.736 kb on - strand, within Pf6N2E2_360at 425.747 kb on + strand, within Pf6N2E2_360at 425.747 kb on + strand, within Pf6N2E2_360at 425.747 kb on + strand, within Pf6N2E2_360at 425.747 kb on + strand, within Pf6N2E2_360at 425.748 kb on - strand, within Pf6N2E2_360at 425.748 kb on - strand, within Pf6N2E2_360at 425.756 kb on + strand, within Pf6N2E2_360at 425.757 kb on - strand, within Pf6N2E2_360at 426.013 kb on - strand, within Pf6N2E2_360at 426.013 kb on - strand, within Pf6N2E2_360at 426.013 kb on - strand, within Pf6N2E2_360at 426.172 kb on + strand, within Pf6N2E2_360at 426.180 kb on - strand, within Pf6N2E2_360at 426.180 kb on - strand, within Pf6N2E2_360at 426.180 kb on - strand, within Pf6N2E2_360at 426.201 kb on - strand, within Pf6N2E2_360at 426.358 kb on + strand, within Pf6N2E2_360at 426.358 kb on + strand, within Pf6N2E2_360at 426.359 kb on - strand, within Pf6N2E2_360at 426.362 kb on + strand, within Pf6N2E2_360at 426.363 kb on - strand, within Pf6N2E2_360at 426.363 kb on - strand, within Pf6N2E2_360at 426.363 kb on - strand, within Pf6N2E2_360at 426.363 kb on - strand, within Pf6N2E2_360at 426.524 kb on + strand, within Pf6N2E2_360at 426.524 kb on + strand, within Pf6N2E2_360at 426.524 kb on + strand, within Pf6N2E2_360at 426.525 kb on - strand, within Pf6N2E2_360at 426.525 kb on - strand, within Pf6N2E2_360at 426.551 kb on + strand, within Pf6N2E2_360at 426.551 kb on + strand, within Pf6N2E2_360at 426.551 kb on + strand, within Pf6N2E2_360at 426.552 kb on - strand, within Pf6N2E2_360at 426.552 kb on - strand, within Pf6N2E2_360at 426.920 kb on + strandat 427.049 kb on + strandat 427.049 kb on + strandat 427.049 kb on + strandat 427.049 kb on + strandat 427.049 kb on + strandat 427.050 kb on - strandat 427.051 kb on + strandat 427.051 kb on + strandat 427.051 kb on + strandat 427.051 kb on + strandat 427.051 kb on + strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.052 kb on - strandat 427.133 kb on + strandat 427.134 kb on - strandat 427.195 kb on + strandat 427.676 kb on + strand, within Pf6N2E2_361at 427.676 kb on + strand, within Pf6N2E2_361at 427.677 kb on - strand, within Pf6N2E2_361at 427.677 kb on - strand, within Pf6N2E2_361at 427.681 kb on - strand, within Pf6N2E2_361at 427.885 kb on - strand, within Pf6N2E2_361

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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424,477 - +1.2
424,861 + Pf6N2E2_359 0.61 -0.8
424,862 - Pf6N2E2_359 0.61 +0.8
424,908 + Pf6N2E2_359 0.65 +1.5
424,908 + Pf6N2E2_359 0.65 -3.1
424,908 + Pf6N2E2_359 0.65 +1.0
424,908 + Pf6N2E2_359 0.65 -2.9
424,908 + Pf6N2E2_359 0.65 -0.7
424,908 + Pf6N2E2_359 0.65 +0.3
424,908 + Pf6N2E2_359 0.65 -2.5
424,908 + Pf6N2E2_359 0.65 -1.1
424,908 + Pf6N2E2_359 0.65 +1.1
424,909 - Pf6N2E2_359 0.65 -0.7
424,909 - Pf6N2E2_359 0.65 -0.3
424,909 - Pf6N2E2_359 0.65 +0.7
424,909 - Pf6N2E2_359 0.65 +0.6
424,909 - Pf6N2E2_359 0.65 +2.2
424,909 - Pf6N2E2_359 0.65 +1.0
424,909 - Pf6N2E2_359 0.65 -3.2
424,935 + Pf6N2E2_359 0.67 +0.5
424,936 - Pf6N2E2_359 0.67 +2.4
425,085 + Pf6N2E2_359 0.79 +0.2
425,085 + Pf6N2E2_359 0.79 +0.7
425,325 + -1.5
425,328 + -1.3
425,344 - -0.6
425,414 + -1.7
425,432 - +1.4
425,735 + Pf6N2E2_360 0.18 +2.3
425,736 - Pf6N2E2_360 0.18 +1.6
425,736 - Pf6N2E2_360 0.18 +1.2
425,747 + Pf6N2E2_360 0.19 -1.3
425,747 + Pf6N2E2_360 0.19 +0.2
425,747 + Pf6N2E2_360 0.19 +0.0
425,747 + Pf6N2E2_360 0.19 +1.0
425,748 - Pf6N2E2_360 0.19 -1.3
425,748 - Pf6N2E2_360 0.19 +1.8
425,756 + Pf6N2E2_360 0.19 +0.1
425,757 - Pf6N2E2_360 0.19 +1.9
426,013 - Pf6N2E2_360 0.35 +1.3
426,013 - Pf6N2E2_360 0.35 -0.7
426,013 - Pf6N2E2_360 0.35 +1.5
426,172 + Pf6N2E2_360 0.44 -0.1
426,180 - Pf6N2E2_360 0.45 +0.0
426,180 - Pf6N2E2_360 0.45 +0.6
426,180 - Pf6N2E2_360 0.45 +0.4
426,201 - Pf6N2E2_360 0.46 +0.1
426,358 + Pf6N2E2_360 0.56 -1.4
426,358 + Pf6N2E2_360 0.56 -1.1
426,359 - Pf6N2E2_360 0.56 +0.5
426,362 + Pf6N2E2_360 0.56 +2.4
426,363 - Pf6N2E2_360 0.56 -0.9
426,363 - Pf6N2E2_360 0.56 +0.8
426,363 - Pf6N2E2_360 0.56 +1.0
426,363 - Pf6N2E2_360 0.56 -0.7
426,524 + Pf6N2E2_360 0.66 -0.7
426,524 + Pf6N2E2_360 0.66 -2.7
426,524 + Pf6N2E2_360 0.66 -2.1
426,525 - Pf6N2E2_360 0.66 -2.1
426,525 - Pf6N2E2_360 0.66 +2.2
426,551 + Pf6N2E2_360 0.68 +0.1
426,551 + Pf6N2E2_360 0.68 -2.3
426,551 + Pf6N2E2_360 0.68 +2.1
426,552 - Pf6N2E2_360 0.68 +0.4
426,552 - Pf6N2E2_360 0.68 -1.6
426,920 + -2.2
427,049 + +0.1
427,049 + -2.8
427,049 + +1.6
427,049 + +1.3
427,049 + +0.3
427,050 - -0.9
427,051 + -1.6
427,051 + -1.0
427,051 + +2.5
427,051 + +0.5
427,051 + -1.9
427,052 - +1.4
427,052 - +0.5
427,052 - +0.6
427,052 - -0.8
427,052 - +0.0
427,052 - -0.0
427,052 - -2.4
427,052 - +1.7
427,133 + +0.6
427,134 - -1.9
427,195 + -2.4
427,676 + Pf6N2E2_361 0.57 -3.2
427,676 + Pf6N2E2_361 0.57 -1.2
427,677 - Pf6N2E2_361 0.57 -1.9
427,677 - Pf6N2E2_361 0.57 -1.1
427,681 - Pf6N2E2_361 0.58 +1.2
427,885 - Pf6N2E2_361 0.79 -1.4

Or see this region's nucleotide sequence