Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1756

Experiment: Hydroxylamine 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1755 and Pf6N2E2_1756 are separated by 73 nucleotidesPf6N2E2_1756 and Pf6N2E2_1757 are separated by 106 nucleotides Pf6N2E2_1755 - 2-Oxobutyrate oxidase, putative, at 2,073,481 to 2,074,533 _1755 Pf6N2E2_1756 - Arginine ABC transporter, periplasmic arginine-binding protein ArtJ, at 2,074,607 to 2,075,413 _1756 Pf6N2E2_1757 - glutamine ABC transporter ATP-binding component, at 2,075,520 to 2,077,028 _1757 Position (kb) 2074 2075 2076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2073.622 kb on + strand, within Pf6N2E2_1755at 2073.623 kb on - strand, within Pf6N2E2_1755at 2073.623 kb on - strand, within Pf6N2E2_1755at 2073.721 kb on + strand, within Pf6N2E2_1755at 2073.721 kb on + strand, within Pf6N2E2_1755at 2073.722 kb on - strand, within Pf6N2E2_1755at 2073.722 kb on - strand, within Pf6N2E2_1755at 2073.775 kb on + strand, within Pf6N2E2_1755at 2073.776 kb on - strand, within Pf6N2E2_1755at 2073.776 kb on - strand, within Pf6N2E2_1755at 2073.923 kb on - strand, within Pf6N2E2_1755at 2073.944 kb on + strand, within Pf6N2E2_1755at 2074.060 kb on - strand, within Pf6N2E2_1755at 2074.060 kb on - strand, within Pf6N2E2_1755at 2074.195 kb on - strand, within Pf6N2E2_1755at 2074.372 kb on + strand, within Pf6N2E2_1755at 2074.469 kb on - strandat 2074.628 kb on - strandat 2074.628 kb on - strandat 2074.755 kb on - strand, within Pf6N2E2_1756at 2074.887 kb on - strand, within Pf6N2E2_1756at 2074.887 kb on - strand, within Pf6N2E2_1756at 2074.910 kb on + strand, within Pf6N2E2_1756at 2074.911 kb on - strand, within Pf6N2E2_1756at 2074.911 kb on - strand, within Pf6N2E2_1756at 2074.911 kb on - strand, within Pf6N2E2_1756at 2074.911 kb on - strand, within Pf6N2E2_1756at 2074.953 kb on - strand, within Pf6N2E2_1756at 2075.093 kb on + strand, within Pf6N2E2_1756at 2075.230 kb on + strand, within Pf6N2E2_1756at 2075.231 kb on - strand, within Pf6N2E2_1756at 2075.231 kb on - strand, within Pf6N2E2_1756at 2075.270 kb on + strand, within Pf6N2E2_1756at 2075.270 kb on + strand, within Pf6N2E2_1756at 2075.270 kb on + strand, within Pf6N2E2_1756at 2075.271 kb on - strand, within Pf6N2E2_1756at 2075.288 kb on - strand, within Pf6N2E2_1756at 2075.292 kb on - strand, within Pf6N2E2_1756at 2075.318 kb on + strand, within Pf6N2E2_1756at 2075.388 kb on - strandat 2075.481 kb on - strandat 2075.481 kb on - strandat 2075.481 kb on - strandat 2075.515 kb on + strandat 2075.586 kb on - strandat 2075.699 kb on + strand, within Pf6N2E2_1757at 2075.700 kb on - strand, within Pf6N2E2_1757at 2075.748 kb on + strand, within Pf6N2E2_1757at 2075.786 kb on - strand, within Pf6N2E2_1757at 2075.841 kb on + strand, within Pf6N2E2_1757at 2075.994 kb on + strand, within Pf6N2E2_1757at 2075.994 kb on + strand, within Pf6N2E2_1757at 2076.120 kb on + strand, within Pf6N2E2_1757at 2076.120 kb on + strand, within Pf6N2E2_1757at 2076.121 kb on - strand, within Pf6N2E2_1757at 2076.123 kb on + strand, within Pf6N2E2_1757at 2076.123 kb on + strand, within Pf6N2E2_1757at 2076.123 kb on + strand, within Pf6N2E2_1757at 2076.123 kb on + strand, within Pf6N2E2_1757at 2076.124 kb on - strand, within Pf6N2E2_1757at 2076.376 kb on + strand, within Pf6N2E2_1757at 2076.377 kb on - strand, within Pf6N2E2_1757at 2076.377 kb on - strand, within Pf6N2E2_1757at 2076.377 kb on - strand, within Pf6N2E2_1757

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M
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2,073,622 + Pf6N2E2_1755 0.13 -1.5
2,073,623 - Pf6N2E2_1755 0.13 -1.4
2,073,623 - Pf6N2E2_1755 0.13 -3.3
2,073,721 + Pf6N2E2_1755 0.23 -0.8
2,073,721 + Pf6N2E2_1755 0.23 -0.2
2,073,722 - Pf6N2E2_1755 0.23 -1.8
2,073,722 - Pf6N2E2_1755 0.23 +0.7
2,073,775 + Pf6N2E2_1755 0.28 +1.5
2,073,776 - Pf6N2E2_1755 0.28 +0.5
2,073,776 - Pf6N2E2_1755 0.28 -2.1
2,073,923 - Pf6N2E2_1755 0.42 -0.7
2,073,944 + Pf6N2E2_1755 0.44 -1.4
2,074,060 - Pf6N2E2_1755 0.55 +1.8
2,074,060 - Pf6N2E2_1755 0.55 -1.7
2,074,195 - Pf6N2E2_1755 0.68 +1.6
2,074,372 + Pf6N2E2_1755 0.85 -1.7
2,074,469 - -3.1
2,074,628 - -0.2
2,074,628 - -2.8
2,074,755 - Pf6N2E2_1756 0.18 -1.0
2,074,887 - Pf6N2E2_1756 0.35 -0.4
2,074,887 - Pf6N2E2_1756 0.35 -1.2
2,074,910 + Pf6N2E2_1756 0.38 +0.4
2,074,911 - Pf6N2E2_1756 0.38 +1.0
2,074,911 - Pf6N2E2_1756 0.38 +0.2
2,074,911 - Pf6N2E2_1756 0.38 +1.4
2,074,911 - Pf6N2E2_1756 0.38 +0.8
2,074,953 - Pf6N2E2_1756 0.43 +0.0
2,075,093 + Pf6N2E2_1756 0.60 +0.8
2,075,230 + Pf6N2E2_1756 0.77 -0.7
2,075,231 - Pf6N2E2_1756 0.77 +0.1
2,075,231 - Pf6N2E2_1756 0.77 +0.9
2,075,270 + Pf6N2E2_1756 0.82 +1.8
2,075,270 + Pf6N2E2_1756 0.82 -1.1
2,075,270 + Pf6N2E2_1756 0.82 +0.7
2,075,271 - Pf6N2E2_1756 0.82 -1.2
2,075,288 - Pf6N2E2_1756 0.84 +1.5
2,075,292 - Pf6N2E2_1756 0.85 -0.2
2,075,318 + Pf6N2E2_1756 0.88 +1.2
2,075,388 - -1.7
2,075,481 - +0.2
2,075,481 - +0.6
2,075,481 - +0.5
2,075,515 + +0.9
2,075,586 - +1.5
2,075,699 + Pf6N2E2_1757 0.12 -2.5
2,075,700 - Pf6N2E2_1757 0.12 +0.6
2,075,748 + Pf6N2E2_1757 0.15 +1.0
2,075,786 - Pf6N2E2_1757 0.18 -1.0
2,075,841 + Pf6N2E2_1757 0.21 +0.4
2,075,994 + Pf6N2E2_1757 0.31 -1.0
2,075,994 + Pf6N2E2_1757 0.31 -1.7
2,076,120 + Pf6N2E2_1757 0.40 -0.7
2,076,120 + Pf6N2E2_1757 0.40 -0.0
2,076,121 - Pf6N2E2_1757 0.40 -1.8
2,076,123 + Pf6N2E2_1757 0.40 -1.1
2,076,123 + Pf6N2E2_1757 0.40 -1.7
2,076,123 + Pf6N2E2_1757 0.40 -2.0
2,076,123 + Pf6N2E2_1757 0.40 +1.2
2,076,124 - Pf6N2E2_1757 0.40 -1.0
2,076,376 + Pf6N2E2_1757 0.57 -1.4
2,076,377 - Pf6N2E2_1757 0.57 +1.3
2,076,377 - Pf6N2E2_1757 0.57 +1.2
2,076,377 - Pf6N2E2_1757 0.57 -1.0

Or see this region's nucleotide sequence