Experiment: Hydroxylamine 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_13 and Pf6N2E2_14 overlap by 4 nucleotides Pf6N2E2_14 and Pf6N2E2_15 are separated by 201 nucleotides
Pf6N2E2_13 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 41,933 to 43,213
_13
Pf6N2E2_14 - Putative dipeptidase, pyoverdin biosynthesis PvdM, at 43,210 to 44,580
_14
Pf6N2E2_15 - Pyoverdine biosynthesis related protein PvdP, at 44,782 to 46,380
_15
Position (kb) 43
44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.360 kb on + strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.361 kb on - strand, within Pf6N2E2_13 at 42.507 kb on + strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.508 kb on - strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.822 kb on + strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13 at 42.823 kb on - strand, within Pf6N2E2_13 at 42.971 kb on - strand, within Pf6N2E2_13 at 43.096 kb on + strand at 43.096 kb on + strand at 43.097 kb on - strand at 43.387 kb on + strand, within Pf6N2E2_14 at 43.387 kb on + strand, within Pf6N2E2_14 at 43.387 kb on + strand, within Pf6N2E2_14 at 43.388 kb on - strand, within Pf6N2E2_14 at 43.388 kb on - strand, within Pf6N2E2_14 at 43.455 kb on - strand, within Pf6N2E2_14 at 43.676 kb on + strand, within Pf6N2E2_14 at 43.803 kb on + strand, within Pf6N2E2_14 at 43.991 kb on + strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 43.992 kb on - strand, within Pf6N2E2_14 at 44.135 kb on + strand, within Pf6N2E2_14 at 44.135 kb on + strand, within Pf6N2E2_14 at 44.235 kb on + strand, within Pf6N2E2_14 at 44.236 kb on - strand, within Pf6N2E2_14 at 44.633 kb on - strand at 44.686 kb on + strand at 44.688 kb on + strand at 44.689 kb on - strand at 44.714 kb on + strand at 44.751 kb on + strand at 44.751 kb on + strand at 44.751 kb on + strand at 44.824 kb on + strand at 44.824 kb on + strand at 44.824 kb on + strand at 44.827 kb on + strand at 44.828 kb on - strand at 45.044 kb on - strand, within Pf6N2E2_15 at 45.179 kb on - strand, within Pf6N2E2_15 at 45.179 kb on - strand, within Pf6N2E2_15 at 45.342 kb on + strand, within Pf6N2E2_15 at 45.342 kb on + strand, within Pf6N2E2_15
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxylamine 0.5 M remove 42,360 + Pf6N2E2_13 0.33 +1.3 42,361 - Pf6N2E2_13 0.33 +3.1 42,361 - Pf6N2E2_13 0.33 +1.6 42,507 + Pf6N2E2_13 0.45 +0.8 42,508 - Pf6N2E2_13 0.45 +1.9 42,508 - Pf6N2E2_13 0.45 -0.4 42,508 - Pf6N2E2_13 0.45 +0.8 42,508 - Pf6N2E2_13 0.45 +0.8 42,822 + Pf6N2E2_13 0.69 +1.0 42,822 + Pf6N2E2_13 0.69 +0.4 42,822 + Pf6N2E2_13 0.69 -2.4 42,822 + Pf6N2E2_13 0.69 -0.1 42,822 + Pf6N2E2_13 0.69 +1.6 42,823 - Pf6N2E2_13 0.69 -0.2 42,823 - Pf6N2E2_13 0.69 +1.5 42,971 - Pf6N2E2_13 0.81 +0.5 43,096 + +0.9 43,096 + -2.9 43,097 - +0.8 43,387 + Pf6N2E2_14 0.13 +0.6 43,387 + Pf6N2E2_14 0.13 -1.2 43,387 + Pf6N2E2_14 0.13 -0.8 43,388 - Pf6N2E2_14 0.13 -0.1 43,388 - Pf6N2E2_14 0.13 -2.0 43,455 - Pf6N2E2_14 0.18 +1.1 43,676 + Pf6N2E2_14 0.34 +1.6 43,803 + Pf6N2E2_14 0.43 -0.3 43,991 + Pf6N2E2_14 0.57 +0.1 43,992 - Pf6N2E2_14 0.57 -1.0 43,992 - Pf6N2E2_14 0.57 -0.5 43,992 - Pf6N2E2_14 0.57 +0.7 44,135 + Pf6N2E2_14 0.67 -0.5 44,135 + Pf6N2E2_14 0.67 -2.2 44,235 + Pf6N2E2_14 0.75 -1.5 44,236 - Pf6N2E2_14 0.75 -1.8 44,633 - -2.3 44,686 + +0.0 44,688 + -0.8 44,689 - +1.5 44,714 + +0.4 44,751 + -1.7 44,751 + -0.4 44,751 + +0.3 44,824 + -0.5 44,824 + -2.5 44,824 + +2.4 44,827 + -1.2 44,828 - -0.5 45,044 - Pf6N2E2_15 0.16 -1.4 45,179 - Pf6N2E2_15 0.25 -1.2 45,179 - Pf6N2E2_15 0.25 -1.4 45,342 + Pf6N2E2_15 0.35 +1.4 45,342 + Pf6N2E2_15 0.35 +2.0
Or see this region's nucleotide sequence