Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS25420

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS25410 and BWI76_RS25415 overlap by 29 nucleotidesBWI76_RS25415 and BWI76_RS25420 are separated by 131 nucleotidesBWI76_RS25420 and BWI76_RS25425 are separated by 412 nucleotides BWI76_RS25410: BWI76_RS25410 - GntR family transcriptional regulator with, at 5,281,820 to 5,282,485 _RS25410 BWI76_RS25415: BWI76_RS25415 - GntR family transcriptional regulator, at 5,282,457 to 5,283,101 _RS25415 BWI76_RS25420: BWI76_RS25420 - malate dehydrogenase, at 5,283,233 to 5,284,171 _RS25420 BWI76_RS25425: BWI76_RS25425 - arginine repressor, at 5,284,584 to 5,285,054 _RS25425 Position (kb) 5283 5284 5285Strain fitness (log2 ratio) -2 -1 0 1at 5282.301 kb on - strand, within BWI76_RS25410at 5282.347 kb on - strand, within BWI76_RS25410at 5282.351 kb on - strand, within BWI76_RS25410at 5282.365 kb on + strandat 5282.477 kb on - strandat 5282.493 kb on - strandat 5282.875 kb on + strand, within BWI76_RS25415at 5283.028 kb on - strand, within BWI76_RS25415at 5283.192 kb on - strandat 5283.383 kb on + strand, within BWI76_RS25420at 5283.633 kb on + strand, within BWI76_RS25420at 5283.826 kb on + strand, within BWI76_RS25420at 5283.844 kb on - strand, within BWI76_RS25420at 5283.856 kb on - strand, within BWI76_RS25420at 5284.085 kb on + strandat 5284.092 kb on - strandat 5284.092 kb on - strandat 5284.106 kb on + strandat 5284.278 kb on + strandat 5284.299 kb on - strandat 5284.333 kb on - strandat 5284.335 kb on + strandat 5284.343 kb on - strandat 5284.343 kb on - strandat 5284.380 kb on + strandat 5284.634 kb on + strand, within BWI76_RS25425at 5284.914 kb on + strand, within BWI76_RS25425at 5285.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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5,282,301 - BWI76_RS25410 0.72 +0.5
5,282,347 - BWI76_RS25410 0.79 +0.5
5,282,351 - BWI76_RS25410 0.80 -0.2
5,282,365 + +1.1
5,282,477 - +0.6
5,282,493 - +1.1
5,282,875 + BWI76_RS25415 0.65 +0.5
5,283,028 - BWI76_RS25415 0.89 +0.7
5,283,192 - +0.6
5,283,383 + BWI76_RS25420 0.16 +0.6
5,283,633 + BWI76_RS25420 0.43 -1.9
5,283,826 + BWI76_RS25420 0.63 -1.2
5,283,844 - BWI76_RS25420 0.65 -0.4
5,283,856 - BWI76_RS25420 0.66 -1.4
5,284,085 + -1.1
5,284,092 - -0.9
5,284,092 - -0.4
5,284,106 + -1.5
5,284,278 + +0.0
5,284,299 - +0.6
5,284,333 - -1.4
5,284,335 + +0.8
5,284,343 - +0.6
5,284,343 - +0.4
5,284,380 + +0.1
5,284,634 + BWI76_RS25425 0.11 -1.1
5,284,914 + BWI76_RS25425 0.70 -1.0
5,285,025 + -0.0

Or see this region's nucleotide sequence