Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24935 and BWI76_RS24940 are separated by 72 nucleotides BWI76_RS24940 and BWI76_RS24945 are separated by 128 nucleotides BWI76_RS24945 and BWI76_RS24950 overlap by 21 nucleotides BWI76_RS24950 and BWI76_RS24955 are separated by 55 nucleotides BWI76_RS24955 and BWI76_RS24960 overlap by 14 nucleotides
BWI76_RS24935: BWI76_RS24935 - hypothetical protein, at 5,195,269 to 5,196,309
_RS24935
BWI76_RS24940: BWI76_RS24940 - hypothetical protein, at 5,196,382 to 5,197,029
_RS24940
BWI76_RS24945: BWI76_RS24945 - glutamine amidotransferase, at 5,197,158 to 5,197,676
_RS24945
BWI76_RS24950: BWI76_RS24950 - hypothetical protein, at 5,197,656 to 5,198,099
_RS24950
BWI76_RS24955: BWI76_RS24955 - hypothetical protein, at 5,198,155 to 5,198,439
_RS24955
BWI76_RS24960: BWI76_RS24960 - N-acetyltransferase, at 5,198,426 to 5,198,929
_RS24960
Position (kb) 5197
5198 Strain fitness (log2 ratio) -2
-1
0
1 at 5196.290 kb on + strand at 5196.343 kb on + strand at 5196.503 kb on + strand, within BWI76_RS24940 at 5196.869 kb on + strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5197.147 kb on - strand at 5197.174 kb on - strand at 5197.206 kb on + strand at 5197.251 kb on - strand, within BWI76_RS24945 at 5197.795 kb on + strand, within BWI76_RS24950 at 5197.854 kb on + strand, within BWI76_RS24950 at 5197.901 kb on - strand, within BWI76_RS24950 at 5198.105 kb on - strand at 5198.121 kb on + strand at 5198.124 kb on + strand at 5198.129 kb on + strand at 5198.129 kb on + strand at 5198.137 kb on - strand at 5198.231 kb on + strand, within BWI76_RS24955 at 5198.344 kb on - strand, within BWI76_RS24955 at 5198.656 kb on + strand, within BWI76_RS24960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,196,290 + -0.5 5,196,343 + +1.5 5,196,503 + BWI76_RS24940 0.19 -0.3 5,196,869 + BWI76_RS24940 0.75 -2.0 5,196,877 - BWI76_RS24940 0.76 -0.5 5,196,877 - BWI76_RS24940 0.76 -0.8 5,197,147 - +0.4 5,197,174 - -0.5 5,197,206 + -0.5 5,197,251 - BWI76_RS24945 0.18 -2.6 5,197,795 + BWI76_RS24950 0.31 -0.0 5,197,854 + BWI76_RS24950 0.45 +1.3 5,197,901 - BWI76_RS24950 0.55 -0.0 5,198,105 - +0.8 5,198,121 + -0.1 5,198,124 + +1.4 5,198,129 + +0.5 5,198,129 + -0.5 5,198,137 - +1.1 5,198,231 + BWI76_RS24955 0.27 +1.4 5,198,344 - BWI76_RS24955 0.66 -1.3 5,198,656 + BWI76_RS24960 0.46 -0.5
Or see this region's nucleotide sequence