Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22705

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22695 and BWI76_RS22700 are separated by 9 nucleotidesBWI76_RS22700 and BWI76_RS22705 are separated by 9 nucleotidesBWI76_RS22705 and BWI76_RS22710 are separated by 237 nucleotides BWI76_RS22695: BWI76_RS22695 - sulfate adenylyltransferase, at 4,727,554 to 4,728,981 _RS22695 BWI76_RS22700: BWI76_RS22700 - sulfate adenylyltransferase subunit 2, at 4,728,991 to 4,729,899 _RS22700 BWI76_RS22705: BWI76_RS22705 - siroheme synthase, at 4,729,909 to 4,731,324 _RS22705 BWI76_RS22710: BWI76_RS22710 - Zn-dependent exopeptidase M28, at 4,731,562 to 4,732,617 _RS22710 Position (kb) 4729 4730 4731 4732Strain fitness (log2 ratio) -2 -1 0 1at 4728.979 kb on - strandat 4728.984 kb on - strandat 4729.054 kb on + strandat 4729.246 kb on + strand, within BWI76_RS22700at 4729.401 kb on + strand, within BWI76_RS22700at 4729.678 kb on + strand, within BWI76_RS22700at 4729.770 kb on + strand, within BWI76_RS22700at 4729.811 kb on + strandat 4729.894 kb on + strandat 4730.052 kb on + strand, within BWI76_RS22705at 4730.060 kb on + strand, within BWI76_RS22705at 4730.060 kb on - strand, within BWI76_RS22705at 4730.163 kb on - strand, within BWI76_RS22705at 4730.166 kb on + strand, within BWI76_RS22705at 4730.202 kb on - strand, within BWI76_RS22705at 4730.277 kb on + strand, within BWI76_RS22705at 4730.454 kb on + strand, within BWI76_RS22705at 4730.523 kb on - strand, within BWI76_RS22705at 4730.565 kb on + strand, within BWI76_RS22705at 4730.573 kb on - strand, within BWI76_RS22705at 4730.663 kb on - strand, within BWI76_RS22705at 4730.663 kb on - strand, within BWI76_RS22705at 4730.735 kb on + strand, within BWI76_RS22705at 4730.787 kb on + strand, within BWI76_RS22705at 4730.832 kb on - strand, within BWI76_RS22705at 4731.028 kb on - strand, within BWI76_RS22705at 4731.028 kb on - strand, within BWI76_RS22705at 4731.252 kb on + strandat 4731.316 kb on + strandat 4731.316 kb on + strandat 4731.324 kb on - strandat 4731.360 kb on + strandat 4731.360 kb on + strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.368 kb on - strandat 4731.373 kb on + strandat 4731.373 kb on + strandat 4731.460 kb on - strandat 4731.514 kb on + strandat 4731.514 kb on + strandat 4731.529 kb on + strandat 4731.545 kb on + strandat 4731.610 kb on + strandat 4731.664 kb on + strandat 4731.672 kb on - strand, within BWI76_RS22710at 4731.681 kb on - strand, within BWI76_RS22710at 4731.765 kb on - strand, within BWI76_RS22710at 4731.791 kb on - strand, within BWI76_RS22710at 4731.804 kb on + strand, within BWI76_RS22710at 4731.804 kb on + strand, within BWI76_RS22710at 4731.813 kb on - strand, within BWI76_RS22710at 4731.819 kb on - strand, within BWI76_RS22710at 4731.844 kb on + strand, within BWI76_RS22710at 4731.912 kb on + strand, within BWI76_RS22710at 4731.915 kb on + strand, within BWI76_RS22710at 4731.920 kb on - strand, within BWI76_RS22710

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,728,979 - -1.6
4,728,984 - -0.0
4,729,054 + -1.1
4,729,246 + BWI76_RS22700 0.28 -2.7
4,729,401 + BWI76_RS22700 0.45 -0.6
4,729,678 + BWI76_RS22700 0.76 -1.7
4,729,770 + BWI76_RS22700 0.86 -1.0
4,729,811 + -0.8
4,729,894 + -0.7
4,730,052 + BWI76_RS22705 0.10 -0.3
4,730,060 + BWI76_RS22705 0.11 -1.6
4,730,060 - BWI76_RS22705 0.11 -1.4
4,730,163 - BWI76_RS22705 0.18 -0.7
4,730,166 + BWI76_RS22705 0.18 -2.5
4,730,202 - BWI76_RS22705 0.21 +1.1
4,730,277 + BWI76_RS22705 0.26 -1.7
4,730,454 + BWI76_RS22705 0.38 -1.3
4,730,523 - BWI76_RS22705 0.43 -0.8
4,730,565 + BWI76_RS22705 0.46 -0.6
4,730,573 - BWI76_RS22705 0.47 -2.2
4,730,663 - BWI76_RS22705 0.53 -0.1
4,730,663 - BWI76_RS22705 0.53 -0.3
4,730,735 + BWI76_RS22705 0.58 -1.9
4,730,787 + BWI76_RS22705 0.62 -0.4
4,730,832 - BWI76_RS22705 0.65 -0.4
4,731,028 - BWI76_RS22705 0.79 -0.1
4,731,028 - BWI76_RS22705 0.79 -1.1
4,731,252 + -0.5
4,731,316 + -1.6
4,731,316 + -0.3
4,731,324 - +0.3
4,731,360 + -1.3
4,731,360 + -1.5
4,731,368 - -0.6
4,731,368 - -0.2
4,731,368 - +0.1
4,731,368 - -0.2
4,731,373 + -1.3
4,731,373 + -0.5
4,731,460 - -0.1
4,731,514 + -0.7
4,731,514 + -0.8
4,731,529 + +0.5
4,731,545 + -0.6
4,731,610 + +1.2
4,731,664 + -0.2
4,731,672 - BWI76_RS22710 0.10 +0.5
4,731,681 - BWI76_RS22710 0.11 -0.5
4,731,765 - BWI76_RS22710 0.19 +0.7
4,731,791 - BWI76_RS22710 0.22 +0.1
4,731,804 + BWI76_RS22710 0.23 -0.2
4,731,804 + BWI76_RS22710 0.23 +0.4
4,731,813 - BWI76_RS22710 0.24 +0.7
4,731,819 - BWI76_RS22710 0.24 +0.4
4,731,844 + BWI76_RS22710 0.27 -0.4
4,731,912 + BWI76_RS22710 0.33 -0.4
4,731,915 + BWI76_RS22710 0.33 -0.2
4,731,920 - BWI76_RS22710 0.34 -0.9

Or see this region's nucleotide sequence