Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20995

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS20990 and BWI76_RS20995 are separated by 177 nucleotidesBWI76_RS20995 and BWI76_RS21000 are separated by 3 nucleotides BWI76_RS20990: BWI76_RS20990 - hypothetical protein, at 4,388,400 to 4,390,073 _RS20990 BWI76_RS20995: BWI76_RS20995 - RNA degradosome polyphosphate kinase, at 4,390,251 to 4,392,311 _RS20995 BWI76_RS21000: BWI76_RS21000 - exopolyphosphatase, at 4,392,315 to 4,393,856 _RS21000 Position (kb) 4390 4391 4392 4393Strain fitness (log2 ratio) -2 -1 0 1at 4389.326 kb on + strand, within BWI76_RS20990at 4389.339 kb on - strand, within BWI76_RS20990at 4389.339 kb on - strand, within BWI76_RS20990at 4389.526 kb on - strand, within BWI76_RS20990at 4389.743 kb on - strand, within BWI76_RS20990at 4389.843 kb on - strand, within BWI76_RS20990at 4389.843 kb on - strand, within BWI76_RS20990at 4389.860 kb on + strand, within BWI76_RS20990at 4389.868 kb on - strand, within BWI76_RS20990at 4389.923 kb on + strandat 4389.931 kb on + strandat 4389.974 kb on + strandat 4389.997 kb on + strandat 4390.000 kb on - strandat 4390.049 kb on + strandat 4390.231 kb on - strandat 4390.241 kb on - strandat 4390.246 kb on - strandat 4390.246 kb on - strandat 4390.446 kb on + strandat 4390.446 kb on + strandat 4390.476 kb on - strand, within BWI76_RS20995at 4390.617 kb on - strand, within BWI76_RS20995at 4391.043 kb on - strand, within BWI76_RS20995at 4391.302 kb on + strand, within BWI76_RS20995at 4391.642 kb on + strand, within BWI76_RS20995at 4392.555 kb on - strand, within BWI76_RS21000at 4392.635 kb on + strand, within BWI76_RS21000at 4393.187 kb on - strand, within BWI76_RS21000at 4393.289 kb on + strand, within BWI76_RS21000at 4393.289 kb on + strand, within BWI76_RS21000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
4,389,326 + BWI76_RS20990 0.55 +0.6
4,389,339 - BWI76_RS20990 0.56 -0.3
4,389,339 - BWI76_RS20990 0.56 +0.5
4,389,526 - BWI76_RS20990 0.67 +0.5
4,389,743 - BWI76_RS20990 0.80 -2.2
4,389,843 - BWI76_RS20990 0.86 -0.1
4,389,843 - BWI76_RS20990 0.86 +0.6
4,389,860 + BWI76_RS20990 0.87 -2.2
4,389,868 - BWI76_RS20990 0.88 -0.7
4,389,923 + -0.1
4,389,931 + +0.5
4,389,974 + -1.8
4,389,997 + +0.2
4,390,000 - +0.7
4,390,049 + +0.7
4,390,231 - -0.8
4,390,241 - -0.2
4,390,246 - -1.6
4,390,246 - +1.4
4,390,446 + -1.9
4,390,446 + -0.5
4,390,476 - BWI76_RS20995 0.11 -1.0
4,390,617 - BWI76_RS20995 0.18 -0.8
4,391,043 - BWI76_RS20995 0.38 -1.3
4,391,302 + BWI76_RS20995 0.51 -2.7
4,391,642 + BWI76_RS20995 0.67 -1.4
4,392,555 - BWI76_RS21000 0.16 +0.6
4,392,635 + BWI76_RS21000 0.21 -0.4
4,393,187 - BWI76_RS21000 0.57 -2.4
4,393,289 + BWI76_RS21000 0.63 -0.4
4,393,289 + BWI76_RS21000 0.63 -0.3

Or see this region's nucleotide sequence