Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19010

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19005 and BWI76_RS19010 overlap by 4 nucleotidesBWI76_RS19010 and BWI76_RS19015 are separated by 16 nucleotides BWI76_RS19005: BWI76_RS19005 - capsular polysaccharide biosynthesis protein, at 3,945,052 to 3,946,038 _RS19005 BWI76_RS19010: BWI76_RS19010 - polysaccharide pyruvyl transferase yvff, at 3,946,035 to 3,946,982 _RS19010 BWI76_RS19015: BWI76_RS19015 - lipopolysaccharide biosynthesis protein, at 3,946,999 to 3,948,471 _RS19015 Position (kb) 3946 3947Strain fitness (log2 ratio) -3 -2 -1 0 1at 3945.088 kb on - strandat 3945.299 kb on - strand, within BWI76_RS19005at 3945.372 kb on - strand, within BWI76_RS19005at 3946.074 kb on - strandat 3946.151 kb on + strand, within BWI76_RS19010at 3946.241 kb on - strand, within BWI76_RS19010at 3946.243 kb on - strand, within BWI76_RS19010at 3946.435 kb on - strand, within BWI76_RS19010at 3946.435 kb on - strand, within BWI76_RS19010at 3946.504 kb on - strand, within BWI76_RS19010at 3946.986 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,945,088 - -0.3
3,945,299 - BWI76_RS19005 0.25 -0.2
3,945,372 - BWI76_RS19005 0.32 +0.4
3,946,074 - +0.2
3,946,151 + BWI76_RS19010 0.12 +0.7
3,946,241 - BWI76_RS19010 0.22 -1.6
3,946,243 - BWI76_RS19010 0.22 -0.7
3,946,435 - BWI76_RS19010 0.42 -0.5
3,946,435 - BWI76_RS19010 0.42 -0.2
3,946,504 - BWI76_RS19010 0.49 -2.9
3,946,986 - -0.1

Or see this region's nucleotide sequence