Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07630 and BWI76_RS07635 are separated by 222 nucleotides BWI76_RS07635 and BWI76_RS07640 are separated by 193 nucleotides BWI76_RS07640 and BWI76_RS07645 are separated by 199 nucleotides
BWI76_RS07630: BWI76_RS07630 - high-affinity choline transporter BetT, at 1,615,343 to 1,617,376
_RS07630
BWI76_RS07635: BWI76_RS07635 - Hok/gef cell toxic protein, at 1,617,599 to 1,617,751
_RS07635
BWI76_RS07640: BWI76_RS07640 - short chain dehydrogenase, at 1,617,945 to 1,618,730
_RS07640
BWI76_RS07645: BWI76_RS07645 - short-chain dehydrogenase/reductase, at 1,618,930 to 1,619,727
_RS07645
Position (kb)
1617
1618
1619 Strain fitness (log2 ratio)
-2
-1
0
1 at 1616.963 kb on + strand, within BWI76_RS07630 at 1617.084 kb on + strand, within BWI76_RS07630 at 1617.371 kb on + strand at 1617.637 kb on + strand, within BWI76_RS07635 at 1617.647 kb on - strand, within BWI76_RS07635 at 1617.647 kb on - strand, within BWI76_RS07635 at 1617.660 kb on + strand at 1617.668 kb on - strand, within BWI76_RS07635 at 1617.668 kb on - strand, within BWI76_RS07635 at 1617.800 kb on + strand at 1617.807 kb on - strand at 1617.890 kb on + strand at 1617.890 kb on - strand at 1618.235 kb on - strand, within BWI76_RS07640 at 1618.235 kb on - strand, within BWI76_RS07640 at 1618.272 kb on + strand, within BWI76_RS07640 at 1618.777 kb on - strand at 1619.180 kb on - strand, within BWI76_RS07645 at 1619.468 kb on - strand, within BWI76_RS07645
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,616,963 + BWI76_RS07630 0.80 -0.0 1,617,084 + BWI76_RS07630 0.86 +0.0 1,617,371 + +0.2 1,617,637 + BWI76_RS07635 0.25 -1.0 1,617,647 - BWI76_RS07635 0.31 -0.3 1,617,647 - BWI76_RS07635 0.31 +1.4 1,617,660 + +1.1 1,617,668 - BWI76_RS07635 0.45 +0.8 1,617,668 - BWI76_RS07635 0.45 -0.3 1,617,800 + -0.4 1,617,807 - +0.6 1,617,890 + -0.4 1,617,890 - -0.2 1,618,235 - BWI76_RS07640 0.37 -1.0 1,618,235 - BWI76_RS07640 0.37 -1.1 1,618,272 + BWI76_RS07640 0.42 -1.4 1,618,777 - -0.1 1,619,180 - BWI76_RS07645 0.31 -0.8 1,619,468 - BWI76_RS07645 0.67 -1.8
Or see this region's nucleotide sequence