Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07640

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07630 and BWI76_RS07635 are separated by 222 nucleotidesBWI76_RS07635 and BWI76_RS07640 are separated by 193 nucleotidesBWI76_RS07640 and BWI76_RS07645 are separated by 199 nucleotides BWI76_RS07630: BWI76_RS07630 - high-affinity choline transporter BetT, at 1,615,343 to 1,617,376 _RS07630 BWI76_RS07635: BWI76_RS07635 - Hok/gef cell toxic protein, at 1,617,599 to 1,617,751 _RS07635 BWI76_RS07640: BWI76_RS07640 - short chain dehydrogenase, at 1,617,945 to 1,618,730 _RS07640 BWI76_RS07645: BWI76_RS07645 - short-chain dehydrogenase/reductase, at 1,618,930 to 1,619,727 _RS07645 Position (kb) 1617 1618 1619Strain fitness (log2 ratio) -2 -1 0 1at 1616.963 kb on + strand, within BWI76_RS07630at 1617.084 kb on + strand, within BWI76_RS07630at 1617.371 kb on + strandat 1617.637 kb on + strand, within BWI76_RS07635at 1617.647 kb on - strand, within BWI76_RS07635at 1617.647 kb on - strand, within BWI76_RS07635at 1617.660 kb on + strandat 1617.668 kb on - strand, within BWI76_RS07635at 1617.668 kb on - strand, within BWI76_RS07635at 1617.800 kb on + strandat 1617.807 kb on - strandat 1617.890 kb on + strandat 1617.890 kb on - strandat 1618.235 kb on - strand, within BWI76_RS07640at 1618.235 kb on - strand, within BWI76_RS07640at 1618.272 kb on + strand, within BWI76_RS07640at 1618.777 kb on - strandat 1619.180 kb on - strand, within BWI76_RS07645at 1619.468 kb on - strand, within BWI76_RS07645

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,616,963 + BWI76_RS07630 0.80 -0.0
1,617,084 + BWI76_RS07630 0.86 +0.0
1,617,371 + +0.2
1,617,637 + BWI76_RS07635 0.25 -1.0
1,617,647 - BWI76_RS07635 0.31 -0.3
1,617,647 - BWI76_RS07635 0.31 +1.4
1,617,660 + +1.1
1,617,668 - BWI76_RS07635 0.45 +0.8
1,617,668 - BWI76_RS07635 0.45 -0.3
1,617,800 + -0.4
1,617,807 - +0.6
1,617,890 + -0.4
1,617,890 - -0.2
1,618,235 - BWI76_RS07640 0.37 -1.0
1,618,235 - BWI76_RS07640 0.37 -1.1
1,618,272 + BWI76_RS07640 0.42 -1.4
1,618,777 - -0.1
1,619,180 - BWI76_RS07645 0.31 -0.8
1,619,468 - BWI76_RS07645 0.67 -1.8

Or see this region's nucleotide sequence