Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05680

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05675 and BWI76_RS05680 are separated by 438 nucleotidesBWI76_RS05680 and BWI76_RS05685 are separated by 251 nucleotides BWI76_RS05675: BWI76_RS05675 - MFS transporter, at 1,192,196 to 1,193,593 _RS05675 BWI76_RS05680: BWI76_RS05680 - LacI family transcriptional regulator, at 1,194,032 to 1,195,063 _RS05680 BWI76_RS05685: BWI76_RS05685 - dihydrodipicolinate synthase family protein, at 1,195,315 to 1,196,244 _RS05685 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1193.074 kb on - strand, within BWI76_RS05675at 1193.180 kb on - strand, within BWI76_RS05675at 1193.254 kb on - strand, within BWI76_RS05675at 1193.260 kb on + strand, within BWI76_RS05675at 1193.336 kb on - strand, within BWI76_RS05675at 1193.380 kb on + strand, within BWI76_RS05675at 1193.587 kb on - strandat 1193.595 kb on + strandat 1193.605 kb on + strandat 1193.646 kb on + strandat 1193.669 kb on - strandat 1193.913 kb on - strandat 1194.009 kb on + strandat 1194.323 kb on - strand, within BWI76_RS05680at 1194.407 kb on + strand, within BWI76_RS05680at 1194.473 kb on + strand, within BWI76_RS05680at 1194.530 kb on - strand, within BWI76_RS05680at 1194.621 kb on - strand, within BWI76_RS05680at 1195.023 kb on + strandat 1195.441 kb on + strand, within BWI76_RS05685at 1195.681 kb on + strand, within BWI76_RS05685at 1195.691 kb on + strand, within BWI76_RS05685at 1195.740 kb on + strand, within BWI76_RS05685at 1195.887 kb on - strand, within BWI76_RS05685at 1195.920 kb on + strand, within BWI76_RS05685at 1195.926 kb on - strand, within BWI76_RS05685at 1195.939 kb on - strand, within BWI76_RS05685at 1195.945 kb on - strand, within BWI76_RS05685at 1196.021 kb on + strand, within BWI76_RS05685at 1196.030 kb on - strand, within BWI76_RS05685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,193,074 - BWI76_RS05675 0.63 -0.8
1,193,180 - BWI76_RS05675 0.70 -0.3
1,193,254 - BWI76_RS05675 0.76 -0.5
1,193,260 + BWI76_RS05675 0.76 +0.9
1,193,336 - BWI76_RS05675 0.82 +0.3
1,193,380 + BWI76_RS05675 0.85 -1.1
1,193,587 - +1.1
1,193,595 + +1.7
1,193,605 + +0.1
1,193,646 + -0.0
1,193,669 - -0.0
1,193,913 - +0.1
1,194,009 + +0.5
1,194,323 - BWI76_RS05680 0.28 -1.6
1,194,407 + BWI76_RS05680 0.36 -0.5
1,194,473 + BWI76_RS05680 0.43 -1.5
1,194,530 - BWI76_RS05680 0.48 -1.0
1,194,621 - BWI76_RS05680 0.57 -0.9
1,195,023 + -3.8
1,195,441 + BWI76_RS05685 0.14 -0.0
1,195,681 + BWI76_RS05685 0.39 +0.3
1,195,691 + BWI76_RS05685 0.40 +0.9
1,195,740 + BWI76_RS05685 0.46 +0.3
1,195,887 - BWI76_RS05685 0.62 +0.9
1,195,920 + BWI76_RS05685 0.65 +0.1
1,195,926 - BWI76_RS05685 0.66 -2.3
1,195,939 - BWI76_RS05685 0.67 +0.7
1,195,945 - BWI76_RS05685 0.68 +2.1
1,196,021 + BWI76_RS05685 0.76 -0.0
1,196,030 - BWI76_RS05685 0.77 +1.0

Or see this region's nucleotide sequence