Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04240

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS04235 and BWI76_RS04240 are separated by 212 nucleotidesBWI76_RS04240 and BWI76_RS04245 are separated by 81 nucleotides BWI76_RS04235: BWI76_RS04235 - tRNA/rRNA methyltransferase, at 871,476 to 872,162 _RS04235 BWI76_RS04240: BWI76_RS04240 - thr operon leader peptide, at 872,375 to 872,443 _RS04240 BWI76_RS04245: BWI76_RS04245 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 872,525 to 874,987 _RS04245 Position (kb) 872 873Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 871.620 kb on - strand, within BWI76_RS04235at 871.624 kb on + strand, within BWI76_RS04235at 871.632 kb on - strand, within BWI76_RS04235at 871.784 kb on + strand, within BWI76_RS04235at 871.868 kb on - strand, within BWI76_RS04235at 871.870 kb on - strand, within BWI76_RS04235at 871.886 kb on + strand, within BWI76_RS04235at 871.903 kb on + strand, within BWI76_RS04235at 871.903 kb on + strand, within BWI76_RS04235at 871.911 kb on - strand, within BWI76_RS04235at 871.930 kb on - strand, within BWI76_RS04235at 872.053 kb on + strand, within BWI76_RS04235at 872.061 kb on - strand, within BWI76_RS04235at 872.061 kb on - strand, within BWI76_RS04235at 872.071 kb on + strand, within BWI76_RS04235at 872.079 kb on - strand, within BWI76_RS04235at 872.110 kb on + strandat 872.110 kb on + strandat 872.118 kb on + strandat 872.123 kb on - strandat 872.337 kb on + strandat 872.362 kb on + strandat 872.368 kb on - strandat 872.433 kb on - strand, within BWI76_RS04240at 872.433 kb on - strand, within BWI76_RS04240at 872.473 kb on + strandat 872.473 kb on + strandat 872.473 kb on + strandat 872.475 kb on + strandat 872.475 kb on + strandat 872.481 kb on - strandat 872.515 kb on + strandat 872.612 kb on - strandat 872.625 kb on + strandat 872.754 kb on - strandat 872.844 kb on + strand, within BWI76_RS04245at 872.844 kb on + strand, within BWI76_RS04245at 872.844 kb on + strand, within BWI76_RS04245at 872.844 kb on + strand, within BWI76_RS04245at 872.852 kb on - strand, within BWI76_RS04245at 872.852 kb on - strand, within BWI76_RS04245at 872.852 kb on - strand, within BWI76_RS04245at 872.852 kb on - strand, within BWI76_RS04245at 872.852 kb on - strand, within BWI76_RS04245at 872.882 kb on - strand, within BWI76_RS04245at 872.935 kb on + strand, within BWI76_RS04245at 873.226 kb on - strand, within BWI76_RS04245at 873.292 kb on - strand, within BWI76_RS04245at 873.295 kb on + strand, within BWI76_RS04245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
871,620 - BWI76_RS04235 0.21 +1.5
871,624 + BWI76_RS04235 0.22 +0.3
871,632 - BWI76_RS04235 0.23 +0.2
871,784 + BWI76_RS04235 0.45 -1.5
871,868 - BWI76_RS04235 0.57 -0.3
871,870 - BWI76_RS04235 0.57 -0.5
871,886 + BWI76_RS04235 0.60 -0.8
871,903 + BWI76_RS04235 0.62 +0.5
871,903 + BWI76_RS04235 0.62 +0.3
871,911 - BWI76_RS04235 0.63 -0.6
871,930 - BWI76_RS04235 0.66 +0.1
872,053 + BWI76_RS04235 0.84 +0.1
872,061 - BWI76_RS04235 0.85 -1.1
872,061 - BWI76_RS04235 0.85 +0.5
872,071 + BWI76_RS04235 0.87 -0.0
872,079 - BWI76_RS04235 0.88 -0.4
872,110 + -0.6
872,110 + -0.4
872,118 + +0.1
872,123 - -0.9
872,337 + -1.9
872,362 + -2.4
872,368 - +0.7
872,433 - BWI76_RS04240 0.84 -2.4
872,433 - BWI76_RS04240 0.84 -1.3
872,473 + +1.9
872,473 + +0.2
872,473 + +0.7
872,475 + +0.7
872,475 + +0.8
872,481 - -0.9
872,515 + -3.2
872,612 - -3.5
872,625 + -4.7
872,754 - -4.8
872,844 + BWI76_RS04245 0.13 -3.3
872,844 + BWI76_RS04245 0.13 -1.5
872,844 + BWI76_RS04245 0.13 -3.4
872,844 + BWI76_RS04245 0.13 -5.1
872,852 - BWI76_RS04245 0.13 -2.6
872,852 - BWI76_RS04245 0.13 -6.1
872,852 - BWI76_RS04245 0.13 -1.3
872,852 - BWI76_RS04245 0.13 -1.8
872,852 - BWI76_RS04245 0.13 -2.5
872,882 - BWI76_RS04245 0.14 -3.1
872,935 + BWI76_RS04245 0.17 -1.1
873,226 - BWI76_RS04245 0.28 +1.7
873,292 - BWI76_RS04245 0.31 -4.9
873,295 + BWI76_RS04245 0.31 -3.7

Or see this region's nucleotide sequence