Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01070

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01065 and BWI76_RS01070 are separated by 341 nucleotidesBWI76_RS01070 and BWI76_RS01075 are separated by 329 nucleotides BWI76_RS01065: BWI76_RS01065 - ATP-dependent RNA helicase RhlB, at 218,446 to 219,711 _RS01065 BWI76_RS01070: BWI76_RS01070 - thiol reductase thioredoxin, at 220,053 to 220,382 _RS01070 BWI76_RS01075: BWI76_RS01075 - transcription termination factor Rho, at 220,712 to 221,971 _RS01075 Position (kb) 220 221Strain fitness (log2 ratio) -2 -1 0 1at 219.065 kb on + strand, within BWI76_RS01065at 219.124 kb on - strand, within BWI76_RS01065at 219.124 kb on - strand, within BWI76_RS01065at 219.254 kb on - strand, within BWI76_RS01065at 219.323 kb on + strand, within BWI76_RS01065at 219.377 kb on - strand, within BWI76_RS01065at 219.742 kb on - strandat 219.863 kb on + strandat 219.901 kb on + strandat 220.103 kb on + strand, within BWI76_RS01070at 220.103 kb on + strand, within BWI76_RS01070at 220.103 kb on + strand, within BWI76_RS01070at 220.111 kb on - strand, within BWI76_RS01070at 220.125 kb on - strand, within BWI76_RS01070at 220.125 kb on - strand, within BWI76_RS01070at 220.155 kb on - strand, within BWI76_RS01070at 220.226 kb on + strand, within BWI76_RS01070at 220.337 kb on + strand, within BWI76_RS01070at 220.344 kb on + strand, within BWI76_RS01070at 220.345 kb on - strand, within BWI76_RS01070at 220.345 kb on - strand, within BWI76_RS01070at 220.414 kb on - strandat 220.433 kb on - strandat 220.448 kb on + strandat 220.504 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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219,065 + BWI76_RS01065 0.49 +0.4
219,124 - BWI76_RS01065 0.54 -0.0
219,124 - BWI76_RS01065 0.54 -0.4
219,254 - BWI76_RS01065 0.64 +0.0
219,323 + BWI76_RS01065 0.69 -1.0
219,377 - BWI76_RS01065 0.74 -0.9
219,742 - -0.0
219,863 + +0.8
219,901 + -2.2
220,103 + BWI76_RS01070 0.15 -1.4
220,103 + BWI76_RS01070 0.15 -1.9
220,103 + BWI76_RS01070 0.15 -0.1
220,111 - BWI76_RS01070 0.18 -1.2
220,125 - BWI76_RS01070 0.22 -1.2
220,125 - BWI76_RS01070 0.22 -0.9
220,155 - BWI76_RS01070 0.31 -2.3
220,226 + BWI76_RS01070 0.52 -0.8
220,337 + BWI76_RS01070 0.86 -0.2
220,344 + BWI76_RS01070 0.88 -0.5
220,345 - BWI76_RS01070 0.88 +0.1
220,345 - BWI76_RS01070 0.88 -1.4
220,414 - +0.1
220,433 - -1.5
220,448 + -0.9
220,504 + -1.0

Or see this region's nucleotide sequence