Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00975

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00970 and BWI76_RS00975 are separated by 60 nucleotidesBWI76_RS00975 and BWI76_RS00980 are separated by 2 nucleotides BWI76_RS00970: BWI76_RS00970 - branched chain amino acid aminotransferase, at 197,304 to 198,233 _RS00970 BWI76_RS00975: BWI76_RS00975 - dihydroxy-acid dehydratase, at 198,294 to 200,144 _RS00975 BWI76_RS00980: BWI76_RS00980 - PLP-dependent threonine dehydratase, at 200,147 to 201,691 _RS00980 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 197.330 kb on - strandat 197.383 kb on + strandat 197.399 kb on - strand, within BWI76_RS00970at 197.484 kb on + strand, within BWI76_RS00970at 197.484 kb on + strand, within BWI76_RS00970at 197.540 kb on + strand, within BWI76_RS00970at 197.540 kb on + strand, within BWI76_RS00970at 197.686 kb on + strand, within BWI76_RS00970at 198.044 kb on + strand, within BWI76_RS00970at 198.112 kb on + strand, within BWI76_RS00970at 198.168 kb on + strandat 198.297 kb on + strandat 198.442 kb on + strandat 198.442 kb on + strandat 198.543 kb on + strand, within BWI76_RS00975at 198.551 kb on - strand, within BWI76_RS00975at 198.608 kb on + strand, within BWI76_RS00975at 198.636 kb on - strand, within BWI76_RS00975at 198.648 kb on + strand, within BWI76_RS00975at 198.849 kb on + strand, within BWI76_RS00975at 198.850 kb on - strand, within BWI76_RS00975at 198.850 kb on - strand, within BWI76_RS00975at 199.017 kb on - strand, within BWI76_RS00975at 199.040 kb on + strand, within BWI76_RS00975at 199.043 kb on - strand, within BWI76_RS00975at 199.226 kb on + strand, within BWI76_RS00975at 199.226 kb on + strand, within BWI76_RS00975at 199.226 kb on + strand, within BWI76_RS00975at 199.226 kb on + strand, within BWI76_RS00975at 199.234 kb on - strand, within BWI76_RS00975at 199.234 kb on - strand, within BWI76_RS00975at 199.740 kb on - strand, within BWI76_RS00975at 199.806 kb on + strand, within BWI76_RS00975at 199.877 kb on - strand, within BWI76_RS00975at 199.960 kb on - strandat 200.009 kb on + strandat 200.062 kb on + strandat 200.070 kb on - strandat 200.192 kb on - strandat 200.207 kb on - strandat 200.207 kb on - strandat 200.229 kb on - strandat 200.244 kb on - strandat 200.325 kb on + strand, within BWI76_RS00980at 200.325 kb on + strand, within BWI76_RS00980at 200.325 kb on + strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.333 kb on - strand, within BWI76_RS00980at 200.558 kb on + strand, within BWI76_RS00980at 200.652 kb on - strand, within BWI76_RS00980at 200.792 kb on + strand, within BWI76_RS00980at 200.845 kb on - strand, within BWI76_RS00980at 200.845 kb on - strand, within BWI76_RS00980at 200.869 kb on - strand, within BWI76_RS00980at 200.929 kb on + strand, within BWI76_RS00980

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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197,330 - -3.2
197,383 + +0.1
197,399 - BWI76_RS00970 0.10 -3.6
197,484 + BWI76_RS00970 0.19 -2.1
197,484 + BWI76_RS00970 0.19 +1.2
197,540 + BWI76_RS00970 0.25 +0.1
197,540 + BWI76_RS00970 0.25 -1.6
197,686 + BWI76_RS00970 0.41 -1.6
198,044 + BWI76_RS00970 0.80 -1.8
198,112 + BWI76_RS00970 0.87 +0.3
198,168 + +0.3
198,297 + -3.1
198,442 + -1.9
198,442 + -3.4
198,543 + BWI76_RS00975 0.13 -2.5
198,551 - BWI76_RS00975 0.14 -4.4
198,608 + BWI76_RS00975 0.17 -2.2
198,636 - BWI76_RS00975 0.18 -5.4
198,648 + BWI76_RS00975 0.19 -2.8
198,849 + BWI76_RS00975 0.30 -0.8
198,850 - BWI76_RS00975 0.30 -3.8
198,850 - BWI76_RS00975 0.30 -4.7
199,017 - BWI76_RS00975 0.39 -5.7
199,040 + BWI76_RS00975 0.40 -1.7
199,043 - BWI76_RS00975 0.40 -4.8
199,226 + BWI76_RS00975 0.50 -5.6
199,226 + BWI76_RS00975 0.50 -0.6
199,226 + BWI76_RS00975 0.50 -6.1
199,226 + BWI76_RS00975 0.50 +0.8
199,234 - BWI76_RS00975 0.51 -1.9
199,234 - BWI76_RS00975 0.51 -4.9
199,740 - BWI76_RS00975 0.78 -2.1
199,806 + BWI76_RS00975 0.82 -1.9
199,877 - BWI76_RS00975 0.86 -4.3
199,960 - -2.9
200,009 + -2.9
200,062 + -0.6
200,070 - -3.1
200,192 - -2.1
200,207 - -5.3
200,207 - -3.5
200,229 - -1.8
200,244 - -4.1
200,325 + BWI76_RS00980 0.12 -4.4
200,325 + BWI76_RS00980 0.12 -1.9
200,325 + BWI76_RS00980 0.12 -4.3
200,333 - BWI76_RS00980 0.12 -2.3
200,333 - BWI76_RS00980 0.12 -3.4
200,333 - BWI76_RS00980 0.12 -2.4
200,333 - BWI76_RS00980 0.12 -4.9
200,333 - BWI76_RS00980 0.12 -4.2
200,333 - BWI76_RS00980 0.12 -2.1
200,333 - BWI76_RS00980 0.12 -2.4
200,333 - BWI76_RS00980 0.12 -3.6
200,333 - BWI76_RS00980 0.12 -4.0
200,333 - BWI76_RS00980 0.12 -3.0
200,558 + BWI76_RS00980 0.27 -4.4
200,652 - BWI76_RS00980 0.33 -1.9
200,792 + BWI76_RS00980 0.42 -2.4
200,845 - BWI76_RS00980 0.45 -1.0
200,845 - BWI76_RS00980 0.45 -2.3
200,869 - BWI76_RS00980 0.47 -4.0
200,929 + BWI76_RS00980 0.51 -4.7

Or see this region's nucleotide sequence