Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00845 and BWI76_RS00850 are separated by 9 nucleotides BWI76_RS00850 and BWI76_RS00855 are separated by 77 nucleotides BWI76_RS00855 and BWI76_RS00860 are separated by 31 nucleotides BWI76_RS00860 and BWI76_RS00865 overlap by 1 nucleotides
BWI76_RS00845: BWI76_RS00845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 174,921 to 175,925
_RS00845
BWI76_RS00850: BWI76_RS00850 - acetylglutamate kinase, at 175,935 to 176,708
_RS00850
BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159
_RS00855
BWI76_RS00860: BWI76_RS00860 - hypothetical protein, at 178,191 to 178,430
_RS00860
BWI76_RS00865: BWI76_RS00865 - DNA-binding transcriptional regulator OxyR, at 178,430 to 179,347
_RS00865
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 175.803 kb on + strand, within BWI76_RS00845 at 175.825 kb on - strand at 176.129 kb on + strand, within BWI76_RS00850 at 176.171 kb on + strand, within BWI76_RS00850 at 176.235 kb on - strand, within BWI76_RS00850 at 176.263 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.358 kb on - strand, within BWI76_RS00850 at 176.583 kb on - strand, within BWI76_RS00850 at 176.612 kb on - strand, within BWI76_RS00850 at 176.652 kb on + strand at 176.655 kb on - strand at 176.669 kb on + strand at 176.669 kb on + strand at 176.737 kb on + strand at 176.861 kb on + strand at 176.876 kb on + strand at 176.917 kb on + strand at 176.966 kb on + strand, within BWI76_RS00855 at 176.994 kb on + strand, within BWI76_RS00855 at 177.129 kb on - strand, within BWI76_RS00855 at 177.132 kb on + strand, within BWI76_RS00855 at 177.164 kb on + strand, within BWI76_RS00855 at 177.231 kb on + strand, within BWI76_RS00855 at 177.375 kb on + strand, within BWI76_RS00855 at 177.458 kb on + strand, within BWI76_RS00855 at 177.466 kb on - strand, within BWI76_RS00855 at 177.598 kb on + strand, within BWI76_RS00855 at 177.712 kb on + strand, within BWI76_RS00855 at 177.719 kb on - strand, within BWI76_RS00855 at 177.744 kb on - strand, within BWI76_RS00855 at 178.145 kb on - strand at 178.161 kb on - strand at 178.161 kb on - strand at 178.175 kb on + strand at 178.551 kb on - strand, within BWI76_RS00865 at 178.618 kb on - strand, within BWI76_RS00865 at 178.761 kb on - strand, within BWI76_RS00865 at 178.943 kb on + strand, within BWI76_RS00865 at 179.153 kb on + strand, within BWI76_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 175,803 + BWI76_RS00845 0.88 -4.9 175,825 - -4.6 176,129 + BWI76_RS00850 0.25 -3.6 176,171 + BWI76_RS00850 0.30 -3.7 176,235 - BWI76_RS00850 0.39 -3.0 176,263 + BWI76_RS00850 0.42 -6.6 176,350 + BWI76_RS00850 0.54 -4.6 176,350 + BWI76_RS00850 0.54 -5.3 176,358 - BWI76_RS00850 0.55 -3.0 176,583 - BWI76_RS00850 0.84 -4.9 176,612 - BWI76_RS00850 0.87 -3.4 176,652 + +0.8 176,655 - -3.6 176,669 + -5.3 176,669 + -3.4 176,737 + +0.2 176,861 + -2.2 176,876 + -5.3 176,917 + -2.0 176,966 + BWI76_RS00855 0.13 -3.3 176,994 + BWI76_RS00855 0.15 -2.3 177,129 - BWI76_RS00855 0.25 -4.4 177,132 + BWI76_RS00855 0.25 -3.1 177,164 + BWI76_RS00855 0.28 -3.6 177,231 + BWI76_RS00855 0.32 +1.8 177,375 + BWI76_RS00855 0.43 -3.6 177,458 + BWI76_RS00855 0.49 -0.6 177,466 - BWI76_RS00855 0.49 -2.6 177,598 + BWI76_RS00855 0.59 -4.7 177,712 + BWI76_RS00855 0.67 -1.2 177,719 - BWI76_RS00855 0.68 -2.3 177,744 - BWI76_RS00855 0.70 -4.3 178,145 - -0.8 178,161 - -0.3 178,161 - +0.4 178,175 + -0.6 178,551 - BWI76_RS00865 0.13 +0.1 178,618 - BWI76_RS00865 0.20 -2.3 178,761 - BWI76_RS00865 0.36 -0.3 178,943 + BWI76_RS00865 0.56 -0.6 179,153 + BWI76_RS00865 0.79 -0.1
Or see this region's nucleotide sequence