Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00855

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00845 and BWI76_RS00850 are separated by 9 nucleotidesBWI76_RS00850 and BWI76_RS00855 are separated by 77 nucleotidesBWI76_RS00855 and BWI76_RS00860 are separated by 31 nucleotidesBWI76_RS00860 and BWI76_RS00865 overlap by 1 nucleotides BWI76_RS00845: BWI76_RS00845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 174,921 to 175,925 _RS00845 BWI76_RS00850: BWI76_RS00850 - acetylglutamate kinase, at 175,935 to 176,708 _RS00850 BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159 _RS00855 BWI76_RS00860: BWI76_RS00860 - hypothetical protein, at 178,191 to 178,430 _RS00860 BWI76_RS00865: BWI76_RS00865 - DNA-binding transcriptional regulator OxyR, at 178,430 to 179,347 _RS00865 Position (kb) 176 177 178 179Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 175.803 kb on + strand, within BWI76_RS00845at 175.825 kb on - strandat 176.129 kb on + strand, within BWI76_RS00850at 176.171 kb on + strand, within BWI76_RS00850at 176.235 kb on - strand, within BWI76_RS00850at 176.263 kb on + strand, within BWI76_RS00850at 176.350 kb on + strand, within BWI76_RS00850at 176.350 kb on + strand, within BWI76_RS00850at 176.358 kb on - strand, within BWI76_RS00850at 176.583 kb on - strand, within BWI76_RS00850at 176.612 kb on - strand, within BWI76_RS00850at 176.652 kb on + strandat 176.655 kb on - strandat 176.669 kb on + strandat 176.669 kb on + strandat 176.737 kb on + strandat 176.861 kb on + strandat 176.876 kb on + strandat 176.917 kb on + strandat 176.966 kb on + strand, within BWI76_RS00855at 176.994 kb on + strand, within BWI76_RS00855at 177.129 kb on - strand, within BWI76_RS00855at 177.132 kb on + strand, within BWI76_RS00855at 177.164 kb on + strand, within BWI76_RS00855at 177.231 kb on + strand, within BWI76_RS00855at 177.375 kb on + strand, within BWI76_RS00855at 177.458 kb on + strand, within BWI76_RS00855at 177.466 kb on - strand, within BWI76_RS00855at 177.598 kb on + strand, within BWI76_RS00855at 177.712 kb on + strand, within BWI76_RS00855at 177.719 kb on - strand, within BWI76_RS00855at 177.744 kb on - strand, within BWI76_RS00855at 178.145 kb on - strandat 178.161 kb on - strandat 178.161 kb on - strandat 178.175 kb on + strandat 178.551 kb on - strand, within BWI76_RS00865at 178.618 kb on - strand, within BWI76_RS00865at 178.761 kb on - strand, within BWI76_RS00865at 178.943 kb on + strand, within BWI76_RS00865at 179.153 kb on + strand, within BWI76_RS00865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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175,803 + BWI76_RS00845 0.88 -4.9
175,825 - -4.6
176,129 + BWI76_RS00850 0.25 -3.6
176,171 + BWI76_RS00850 0.30 -3.7
176,235 - BWI76_RS00850 0.39 -3.0
176,263 + BWI76_RS00850 0.42 -6.6
176,350 + BWI76_RS00850 0.54 -4.6
176,350 + BWI76_RS00850 0.54 -5.3
176,358 - BWI76_RS00850 0.55 -3.0
176,583 - BWI76_RS00850 0.84 -4.9
176,612 - BWI76_RS00850 0.87 -3.4
176,652 + +0.8
176,655 - -3.6
176,669 + -5.3
176,669 + -3.4
176,737 + +0.2
176,861 + -2.2
176,876 + -5.3
176,917 + -2.0
176,966 + BWI76_RS00855 0.13 -3.3
176,994 + BWI76_RS00855 0.15 -2.3
177,129 - BWI76_RS00855 0.25 -4.4
177,132 + BWI76_RS00855 0.25 -3.1
177,164 + BWI76_RS00855 0.28 -3.6
177,231 + BWI76_RS00855 0.32 +1.8
177,375 + BWI76_RS00855 0.43 -3.6
177,458 + BWI76_RS00855 0.49 -0.6
177,466 - BWI76_RS00855 0.49 -2.6
177,598 + BWI76_RS00855 0.59 -4.7
177,712 + BWI76_RS00855 0.67 -1.2
177,719 - BWI76_RS00855 0.68 -2.3
177,744 - BWI76_RS00855 0.70 -4.3
178,145 - -0.8
178,161 - -0.3
178,161 - +0.4
178,175 + -0.6
178,551 - BWI76_RS00865 0.13 +0.1
178,618 - BWI76_RS00865 0.20 -2.3
178,761 - BWI76_RS00865 0.36 -0.3
178,943 + BWI76_RS00865 0.56 -0.6
179,153 + BWI76_RS00865 0.79 -0.1

Or see this region's nucleotide sequence