Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00805

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00800 and BWI76_RS00805 are separated by 166 nucleotidesBWI76_RS00805 and BWI76_RS00810 are separated by 132 nucleotides BWI76_RS00800: BWI76_RS00800 - LysR family transcriptional regulator, at 163,911 to 164,816 _RS00800 BWI76_RS00805: BWI76_RS00805 - 5,10-methylenetetrahydrofolate reductase, at 164,983 to 165,870 _RS00805 BWI76_RS00810: BWI76_RS00810 - DeoR family transcriptional regulator, at 166,003 to 166,752 _RS00810 Position (kb) 164 165 166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 164.060 kb on + strandat 164.154 kb on + strand, within BWI76_RS00800at 164.233 kb on + strand, within BWI76_RS00800at 164.241 kb on - strand, within BWI76_RS00800at 164.241 kb on - strand, within BWI76_RS00800at 164.464 kb on + strand, within BWI76_RS00800at 164.734 kb on - strandat 164.739 kb on - strandat 164.745 kb on - strandat 164.791 kb on - strandat 164.988 kb on - strandat 165.056 kb on - strandat 165.139 kb on - strand, within BWI76_RS00805at 165.252 kb on - strand, within BWI76_RS00805at 165.364 kb on - strand, within BWI76_RS00805at 165.492 kb on + strand, within BWI76_RS00805at 165.803 kb on + strandat 165.808 kb on + strandat 165.811 kb on - strandat 165.816 kb on - strandat 165.823 kb on + strandat 165.823 kb on + strandat 165.848 kb on + strandat 165.853 kb on + strandat 165.880 kb on + strandat 165.914 kb on + strandat 166.001 kb on + strandat 166.009 kb on - strandat 166.009 kb on - strandat 166.068 kb on - strandat 166.095 kb on + strand, within BWI76_RS00810at 166.204 kb on - strand, within BWI76_RS00810at 166.254 kb on + strand, within BWI76_RS00810at 166.262 kb on - strand, within BWI76_RS00810at 166.293 kb on - strand, within BWI76_RS00810at 166.346 kb on - strand, within BWI76_RS00810at 166.447 kb on - strand, within BWI76_RS00810at 166.704 kb on + strandat 166.704 kb on + strandat 166.826 kb on + strandat 166.827 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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164,060 + +1.8
164,154 + BWI76_RS00800 0.27 +0.6
164,233 + BWI76_RS00800 0.36 +0.5
164,241 - BWI76_RS00800 0.36 +0.2
164,241 - BWI76_RS00800 0.36 +0.5
164,464 + BWI76_RS00800 0.61 +0.3
164,734 - -0.3
164,739 - +2.8
164,745 - +0.1
164,791 - +0.3
164,988 - -2.6
165,056 - -3.7
165,139 - BWI76_RS00805 0.18 -1.3
165,252 - BWI76_RS00805 0.30 -3.3
165,364 - BWI76_RS00805 0.43 -2.9
165,492 + BWI76_RS00805 0.57 -3.5
165,803 + -2.0
165,808 + -3.3
165,811 - -3.2
165,816 - -3.5
165,823 + -4.4
165,823 + -2.8
165,848 + -0.3
165,853 + -4.1
165,880 + +0.1
165,914 + +0.3
166,001 + +0.3
166,009 - -1.0
166,009 - -1.2
166,068 - +0.5
166,095 + BWI76_RS00810 0.12 -0.4
166,204 - BWI76_RS00810 0.27 -0.3
166,254 + BWI76_RS00810 0.33 -0.0
166,262 - BWI76_RS00810 0.35 +0.2
166,293 - BWI76_RS00810 0.39 +0.1
166,346 - BWI76_RS00810 0.46 +0.2
166,447 - BWI76_RS00810 0.59 +0.5
166,704 + -2.2
166,704 + +0.8
166,826 + -0.7
166,827 + +1.1

Or see this region's nucleotide sequence