Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25295 and AO356_25300 overlap by 4 nucleotides AO356_25300 and AO356_25305 overlap by 4 nucleotides AO356_25305 and AO356_25310 are separated by 21 nucleotides AO356_25310 and AO356_25315 are separated by 5 nucleotides
AO356_25295: AO356_25295 - hypothetical protein, at 5,726,212 to 5,726,778
_25295
AO356_25300: AO356_25300 - hypothetical protein, at 5,726,775 to 5,727,314
_25300
AO356_25305: AO356_25305 - metal ABC transporter ATPase, at 5,727,311 to 5,727,616
_25305
AO356_25310: AO356_25310 - hypothetical protein, at 5,727,638 to 5,728,126
_25310
AO356_25315: AO356_25315 - cyclopropane-fatty-acyl-phospholipid synthase, at 5,728,132 to 5,729,394
_25315
Position (kb) 5727
5728
5729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5726.806 kb on + strand at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.177 kb on + strand, within AO356_25300 at 5727.178 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.205 kb on - strand, within AO356_25300 at 5727.393 kb on - strand, within AO356_25305 at 5727.393 kb on - strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.396 kb on + strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.397 kb on - strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.427 kb on + strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.428 kb on - strand, within AO356_25305 at 5727.615 kb on - strand at 5727.677 kb on + strand at 5727.677 kb on + strand at 5727.678 kb on - strand at 5727.762 kb on + strand, within AO356_25310 at 5727.763 kb on - strand, within AO356_25310 at 5727.833 kb on - strand, within AO356_25310 at 5728.133 kb on + strand at 5728.230 kb on - strand at 5728.230 kb on - strand at 5728.238 kb on + strand at 5728.239 kb on - strand at 5728.271 kb on + strand, within AO356_25315 at 5728.340 kb on + strand, within AO356_25315 at 5728.340 kb on + strand, within AO356_25315 at 5728.341 kb on - strand, within AO356_25315 at 5728.563 kb on - strand, within AO356_25315 at 5728.622 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.754 kb on + strand, within AO356_25315 at 5728.755 kb on - strand, within AO356_25315 at 5728.913 kb on + strand, within AO356_25315 at 5728.965 kb on - strand, within AO356_25315 at 5728.965 kb on - strand, within AO356_25315 at 5728.977 kb on + strand, within AO356_25315 at 5728.977 kb on + strand, within AO356_25315
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 5,726,806 + +0.3 5,727,177 + AO356_25300 0.74 +0.2 5,727,177 + AO356_25300 0.74 +2.0 5,727,177 + AO356_25300 0.74 +1.8 5,727,178 - AO356_25300 0.75 -0.7 5,727,205 - AO356_25300 0.80 -0.6 5,727,205 - AO356_25300 0.80 -1.1 5,727,393 - AO356_25305 0.27 -1.1 5,727,393 - AO356_25305 0.27 +0.9 5,727,396 + AO356_25305 0.28 +0.1 5,727,396 + AO356_25305 0.28 +0.1 5,727,396 + AO356_25305 0.28 -0.3 5,727,397 - AO356_25305 0.28 +0.1 5,727,397 - AO356_25305 0.28 +0.1 5,727,397 - AO356_25305 0.28 +0.8 5,727,427 + AO356_25305 0.38 +0.2 5,727,427 + AO356_25305 0.38 -0.5 5,727,428 - AO356_25305 0.38 +1.4 5,727,428 - AO356_25305 0.38 -0.3 5,727,615 - -0.3 5,727,677 + -0.9 5,727,677 + +0.7 5,727,678 - -1.6 5,727,762 + AO356_25310 0.25 -1.8 5,727,763 - AO356_25310 0.26 +0.2 5,727,833 - AO356_25310 0.40 -0.4 5,728,133 + -0.9 5,728,230 - +1.8 5,728,230 - -0.1 5,728,238 + +0.4 5,728,239 - +0.1 5,728,271 + AO356_25315 0.11 +0.6 5,728,340 + AO356_25315 0.16 +0.3 5,728,340 + AO356_25315 0.16 +1.0 5,728,341 - AO356_25315 0.17 +0.7 5,728,563 - AO356_25315 0.34 -0.0 5,728,622 + AO356_25315 0.39 -0.9 5,728,754 + AO356_25315 0.49 -1.3 5,728,754 + AO356_25315 0.49 -0.8 5,728,754 + AO356_25315 0.49 +0.9 5,728,754 + AO356_25315 0.49 -0.4 5,728,754 + AO356_25315 0.49 -0.3 5,728,754 + AO356_25315 0.49 +0.6 5,728,754 + AO356_25315 0.49 -0.2 5,728,755 - AO356_25315 0.49 +0.8 5,728,913 + AO356_25315 0.62 +0.6 5,728,965 - AO356_25315 0.66 +0.0 5,728,965 - AO356_25315 0.66 -0.6 5,728,977 + AO356_25315 0.67 +0.2 5,728,977 + AO356_25315 0.67 -2.5
Or see this region's nucleotide sequence