Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24705 and AO356_24710 are separated by 187 nucleotides AO356_24710 and AO356_24715 are separated by 330 nucleotides AO356_24715 and AO356_24720 are separated by 120 nucleotides
AO356_24705: AO356_24705 - NAD-glutamate dehydrogenase, at 5,587,205 to 5,592,073
_24705
AO356_24710: AO356_24710 - cupin, at 5,592,261 to 5,592,665
_24710
AO356_24715: AO356_24715 - antibiotic biosynthesis monooxygenase, at 5,592,996 to 5,593,289
_24715
AO356_24720: AO356_24720 - DNA-binding protein, at 5,593,410 to 5,594,843
_24720
Position (kb) 5592
5593 Strain fitness (log2 ratio) -2
-1
0
1 at 5591.315 kb on + strand, within AO356_24705 at 5591.315 kb on + strand, within AO356_24705 at 5591.315 kb on + strand, within AO356_24705 at 5591.333 kb on - strand, within AO356_24705 at 5591.585 kb on + strand, within AO356_24705 at 5591.595 kb on - strand at 5591.654 kb on + strand at 5591.654 kb on + strand at 5591.723 kb on + strand at 5591.723 kb on + strand at 5591.723 kb on + strand at 5592.005 kb on + strand at 5592.005 kb on + strand at 5592.006 kb on - strand at 5592.006 kb on - strand at 5592.006 kb on - strand at 5592.250 kb on + strand at 5592.251 kb on - strand at 5592.262 kb on + strand at 5592.262 kb on + strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.403 kb on + strand, within AO356_24710 at 5592.403 kb on + strand, within AO356_24710 at 5592.403 kb on + strand, within AO356_24710 at 5592.404 kb on - strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.610 kb on + strand, within AO356_24710 at 5592.652 kb on + strand at 5592.653 kb on - strand at 5592.726 kb on - strand at 5593.166 kb on + strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.167 kb on - strand, within AO356_24715 at 5593.168 kb on + strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.169 kb on - strand, within AO356_24715 at 5593.263 kb on + strand at 5593.391 kb on + strand at 5593.392 kb on - strand at 5593.540 kb on + strand at 5593.616 kb on + strand, within AO356_24720 at 5593.616 kb on + strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720 at 5593.617 kb on - strand, within AO356_24720
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 5,591,315 + AO356_24705 0.84 -1.6 5,591,315 + AO356_24705 0.84 -1.1 5,591,315 + AO356_24705 0.84 -0.5 5,591,333 - AO356_24705 0.85 -0.1 5,591,585 + AO356_24705 0.90 -0.6 5,591,595 - -0.5 5,591,654 + +1.5 5,591,654 + -0.6 5,591,723 + -1.9 5,591,723 + -0.3 5,591,723 + +0.1 5,592,005 + -0.0 5,592,005 + -1.2 5,592,006 - -1.4 5,592,006 - +0.7 5,592,006 - -0.8 5,592,250 + -0.8 5,592,251 - +0.1 5,592,262 + +1.4 5,592,262 + -0.1 5,592,263 - +0.4 5,592,263 - -0.1 5,592,263 - -0.6 5,592,263 - -0.1 5,592,403 + AO356_24710 0.35 -0.2 5,592,403 + AO356_24710 0.35 +0.7 5,592,403 + AO356_24710 0.35 +0.9 5,592,404 - AO356_24710 0.35 +1.4 5,592,457 + AO356_24710 0.48 -0.8 5,592,457 + AO356_24710 0.48 -0.6 5,592,457 + AO356_24710 0.48 -0.3 5,592,512 - AO356_24710 0.62 +1.1 5,592,512 - AO356_24710 0.62 -1.2 5,592,610 + AO356_24710 0.86 +1.0 5,592,652 + +0.0 5,592,653 - +0.2 5,592,726 - -0.3 5,593,166 + AO356_24715 0.58 -0.5 5,593,167 - AO356_24715 0.58 -2.2 5,593,167 - AO356_24715 0.58 -1.6 5,593,168 + AO356_24715 0.59 +0.5 5,593,169 - AO356_24715 0.59 -0.7 5,593,169 - AO356_24715 0.59 +0.4 5,593,169 - AO356_24715 0.59 +1.4 5,593,169 - AO356_24715 0.59 -0.9 5,593,263 + -0.0 5,593,391 + -1.6 5,593,392 - +0.4 5,593,540 + +0.4 5,593,616 + AO356_24720 0.14 +0.6 5,593,616 + AO356_24720 0.14 -1.3 5,593,617 - AO356_24720 0.14 +0.3 5,593,617 - AO356_24720 0.14 -2.7
Or see this region's nucleotide sequence