Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24345 and AO356_24350 are separated by 30 nucleotides AO356_24350 and AO356_24355 are separated by 224 nucleotides AO356_24355 and AO356_24360 are separated by 52 nucleotides
AO356_24345: AO356_24345 - EvpB family type VI secretion protein, at 5,494,752 to 5,496,233
_24345
AO356_24350: AO356_24350 - type VI secretion protein, at 5,496,264 to 5,496,824
_24350
AO356_24355: AO356_24355 - type VI secretion protein, at 5,497,049 to 5,497,513
_24355
AO356_24360: AO356_24360 - type VI secretion protein, at 5,497,566 to 5,498,897
_24360
Position (kb) 5497
5498 Strain fitness (log2 ratio) -1
0
1 at 5496.763 kb on + strand, within AO356_24350 at 5496.763 kb on + strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.764 kb on - strand, within AO356_24350 at 5496.972 kb on + strand at 5497.394 kb on + strand, within AO356_24355 at 5497.394 kb on + strand, within AO356_24355 at 5497.394 kb on + strand, within AO356_24355 at 5497.394 kb on + strand, within AO356_24355 at 5497.395 kb on - strand, within AO356_24355 at 5497.395 kb on - strand, within AO356_24355 at 5497.396 kb on + strand, within AO356_24355 at 5497.396 kb on + strand, within AO356_24355 at 5497.565 kb on + strand at 5497.565 kb on + strand at 5497.565 kb on + strand at 5497.566 kb on - strand at 5497.566 kb on - strand at 5497.566 kb on - strand at 5497.566 kb on - strand at 5497.878 kb on + strand, within AO356_24360 at 5498.347 kb on - strand, within AO356_24360 at 5498.347 kb on - strand, within AO356_24360 at 5498.347 kb on - strand, within AO356_24360
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 5,496,763 + AO356_24350 0.89 +1.2 5,496,763 + AO356_24350 0.89 +0.0 5,496,764 - AO356_24350 0.89 +1.2 5,496,764 - AO356_24350 0.89 +0.2 5,496,764 - AO356_24350 0.89 +0.0 5,496,764 - AO356_24350 0.89 +0.8 5,496,764 - AO356_24350 0.89 -0.9 5,496,764 - AO356_24350 0.89 +0.8 5,496,972 + +0.4 5,497,394 + AO356_24355 0.74 +0.8 5,497,394 + AO356_24355 0.74 -0.0 5,497,394 + AO356_24355 0.74 -0.1 5,497,394 + AO356_24355 0.74 -0.1 5,497,395 - AO356_24355 0.74 +0.4 5,497,395 - AO356_24355 0.74 -0.7 5,497,396 + AO356_24355 0.75 -0.8 5,497,396 + AO356_24355 0.75 +1.6 5,497,565 + -0.7 5,497,565 + +0.5 5,497,565 + -1.0 5,497,566 - -0.8 5,497,566 - +0.8 5,497,566 - +0.3 5,497,566 - -0.1 5,497,878 + AO356_24360 0.23 +0.6 5,498,347 - AO356_24360 0.59 -0.1 5,498,347 - AO356_24360 0.59 -0.3 5,498,347 - AO356_24360 0.59 +0.0
Or see this region's nucleotide sequence