Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20985 and AO356_20990 are separated by 72 nucleotides AO356_20990 and AO356_20995 are separated by 30 nucleotides AO356_20995 and AO356_21000 are separated by 238 nucleotides AO356_21000 and AO356_21005 are separated by 153 nucleotides AO356_21005 and AO356_21010 are separated by 118 nucleotides AO356_21010 and AO356_21015 are separated by 154 nucleotides
AO356_20985: AO356_20985 - 16S ribosomal RNA, at 4,670,688 to 4,672,233
_20985
AO356_20990: AO356_20990 - tRNA-Ile, at 4,672,306 to 4,672,382
_20990
AO356_20995: AO356_20995 - tRNA-Ala, at 4,672,413 to 4,672,488
_20995
AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642
_21000
AO356_21005: AO356_21005 - 5S ribosomal RNA, at 4,675,796 to 4,675,911
_21005
AO356_21010: AO356_21010 - urease-associated protein, at 4,676,030 to 4,676,431
_21010
AO356_21015: AO356_21015 - vanillate O-demethylase oxidoreductase VanB, at 4,676,586 to 4,677,044
_21015
Position (kb) 4672
4673
4674
4675
4676 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4675.870 kb on + strand, within AO356_21005 at 4675.968 kb on + strand at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.134 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.424 kb on - strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.474 kb on - strand at 4676.474 kb on - strand at 4676.524 kb on + strand at 4676.525 kb on - strand at 4676.525 kb on - strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 4,675,870 + AO356_21005 0.64 -2.2 4,675,968 + +0.6 4,676,079 + AO356_21010 0.12 -1.4 4,676,079 + AO356_21010 0.12 -1.3 4,676,079 + AO356_21010 0.12 -0.8 4,676,080 - AO356_21010 0.12 -0.4 4,676,080 - AO356_21010 0.12 +1.5 4,676,080 - AO356_21010 0.12 -0.1 4,676,080 - AO356_21010 0.12 +0.5 4,676,080 - AO356_21010 0.12 +0.2 4,676,080 - AO356_21010 0.12 -0.4 4,676,133 + AO356_21010 0.26 -0.7 4,676,133 + AO356_21010 0.26 +0.9 4,676,133 + AO356_21010 0.26 +0.1 4,676,134 - AO356_21010 0.26 -0.5 4,676,146 - AO356_21010 0.29 +0.4 4,676,146 - AO356_21010 0.29 -0.7 4,676,280 + AO356_21010 0.62 +0.0 4,676,280 + AO356_21010 0.62 -0.8 4,676,280 + AO356_21010 0.62 -1.2 4,676,280 + AO356_21010 0.62 -0.6 4,676,281 - AO356_21010 0.62 +0.3 4,676,281 - AO356_21010 0.62 +0.3 4,676,350 + AO356_21010 0.80 +0.2 4,676,350 + AO356_21010 0.80 +0.7 4,676,350 + AO356_21010 0.80 +1.1 4,676,350 + AO356_21010 0.80 -0.8 4,676,350 + AO356_21010 0.80 -0.4 4,676,351 - AO356_21010 0.80 +0.2 4,676,351 - AO356_21010 0.80 +0.2 4,676,424 - +1.1 4,676,473 + +0.1 4,676,473 + +0.4 4,676,473 + -0.7 4,676,474 - +0.9 4,676,474 - -0.0 4,676,524 + +0.3 4,676,525 - -0.4 4,676,525 - -1.4 4,676,552 + -0.6 4,676,552 + +0.0 4,676,552 + +0.0 4,676,553 - -2.8 4,676,553 - +0.7 4,676,553 - -1.2 4,676,553 - -1.1 4,676,560 + +0.6 4,676,560 + +0.2 4,676,560 + -0.1 4,676,561 - +0.5
Or see this region's nucleotide sequence