Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15935 and AO356_15940 are separated by 299 nucleotides AO356_15940 and AO356_15945 are separated by 7 nucleotides AO356_15945 and AO356_15950 are separated by 5 nucleotides AO356_15950 and AO356_15955 are separated by 93 nucleotides AO356_15955 and AO356_15960 are separated by 146 nucleotides AO356_15960 and AO356_15965 are separated by 152 nucleotides
AO356_15935: AO356_15935 - ATP-dependent chaperone ClpB, at 3,607,377 to 3,609,941
_15935
AO356_15940: AO356_15940 - tRNA-Asn, at 3,610,241 to 3,610,316
_15940
AO356_15945: AO356_15945 - tRNA-Pro, at 3,610,324 to 3,610,400
_15945
AO356_15950: AO356_15950 - tRNA-Lys, at 3,610,406 to 3,610,481
_15950
AO356_15955: AO356_15955 - tRNA-Pro, at 3,610,575 to 3,610,651
_15955
AO356_15960: AO356_15960 - chemotaxis protein, at 3,610,798 to 3,612,423
_15960
AO356_15965: AO356_15965 - NADH dehydrogenase, at 3,612,576 to 3,613,874
_15965
Position (kb)
3610
3611
3612
3613 Strain fitness (log2 ratio)
-2
-1
0
1 at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.028 kb on + strand at 3610.045 kb on + strand at 3610.089 kb on + strand at 3610.089 kb on + strand at 3610.089 kb on + strand at 3610.455 kb on + strand, within AO356_15950 at 3610.581 kb on - strand at 3610.667 kb on + strand at 3610.678 kb on - strand at 3610.726 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.780 kb on + strand at 3610.781 kb on - strand at 3610.797 kb on + strand at 3610.818 kb on + strand at 3610.818 kb on + strand at 3610.819 kb on - strand at 3610.819 kb on - strand at 3611.047 kb on + strand, within AO356_15960 at 3611.047 kb on + strand, within AO356_15960 at 3611.048 kb on - strand, within AO356_15960 at 3611.140 kb on + strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.141 kb on - strand, within AO356_15960 at 3611.350 kb on + strand, within AO356_15960 at 3611.351 kb on - strand, within AO356_15960 at 3611.351 kb on - strand, within AO356_15960 at 3611.682 kb on + strand, within AO356_15960 at 3612.049 kb on + strand, within AO356_15960 at 3612.544 kb on - strand at 3612.544 kb on - strand at 3612.544 kb on - strand at 3612.679 kb on + strand at 3612.691 kb on + strand at 3612.691 kb on + strand at 3612.691 kb on + strand at 3612.692 kb on - strand at 3612.692 kb on - strand at 3612.692 kb on - strand at 3612.723 kb on + strand, within AO356_15965 at 3612.723 kb on + strand, within AO356_15965 at 3612.724 kb on - strand, within AO356_15965 at 3612.724 kb on - strand, within AO356_15965 at 3612.793 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.802 kb on + strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.803 kb on - strand, within AO356_15965 at 3612.809 kb on - strand, within AO356_15965 at 3612.975 kb on + strand, within AO356_15965 at 3612.975 kb on + strand, within AO356_15965 at 3612.975 kb on + strand, within AO356_15965 at 3612.975 kb on + strand, within AO356_15965 at 3612.976 kb on - strand, within AO356_15965 at 3612.976 kb on - strand, within AO356_15965 at 3612.987 kb on + strand, within AO356_15965 at 3612.988 kb on - strand, within AO356_15965 at 3612.988 kb on - strand, within AO356_15965 at 3612.988 kb on - strand, within AO356_15965 at 3612.988 kb on - strand, within AO356_15965 at 3613.199 kb on + strand, within AO356_15965 at 3613.286 kb on - strand, within AO356_15965 at 3613.310 kb on + strand, within AO356_15965 at 3613.311 kb on - strand, within AO356_15965 at 3613.311 kb on - strand, within AO356_15965 at 3613.411 kb on + strand, within AO356_15965 at 3613.411 kb on + strand, within AO356_15965 at 3613.412 kb on - strand, within AO356_15965 at 3613.412 kb on - strand, within AO356_15965 at 3613.412 kb on - strand, within AO356_15965
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 3,610,028 + -0.6 3,610,028 + +0.1 3,610,028 + +0.2 3,610,028 + +0.1 3,610,045 + -0.2 3,610,089 + +1.3 3,610,089 + -0.0 3,610,089 + +0.7 3,610,455 + AO356_15950 0.64 -1.4 3,610,581 - -2.0 3,610,667 + +0.7 3,610,678 - +0.8 3,610,726 + -0.7 3,610,780 + +0.3 3,610,780 + -0.9 3,610,780 + -0.7 3,610,780 + -1.0 3,610,780 + -0.8 3,610,781 - +0.3 3,610,797 + +0.3 3,610,818 + +0.2 3,610,818 + +0.6 3,610,819 - -0.4 3,610,819 - -0.1 3,611,047 + AO356_15960 0.15 +0.9 3,611,047 + AO356_15960 0.15 -0.5 3,611,048 - AO356_15960 0.15 +0.1 3,611,140 + AO356_15960 0.21 -0.8 3,611,141 - AO356_15960 0.21 -1.0 3,611,141 - AO356_15960 0.21 -1.2 3,611,141 - AO356_15960 0.21 +0.1 3,611,141 - AO356_15960 0.21 +0.2 3,611,350 + AO356_15960 0.34 +0.1 3,611,351 - AO356_15960 0.34 +0.2 3,611,351 - AO356_15960 0.34 +0.6 3,611,682 + AO356_15960 0.54 -0.4 3,612,049 + AO356_15960 0.77 -0.4 3,612,544 - -0.5 3,612,544 - +0.3 3,612,544 - -0.2 3,612,679 + -0.0 3,612,691 + +0.4 3,612,691 + +0.1 3,612,691 + -0.1 3,612,692 - -0.3 3,612,692 - -0.0 3,612,692 - -1.0 3,612,723 + AO356_15965 0.11 +0.2 3,612,723 + AO356_15965 0.11 -1.1 3,612,724 - AO356_15965 0.11 +0.5 3,612,724 - AO356_15965 0.11 +0.3 3,612,793 + AO356_15965 0.17 +0.2 3,612,802 + AO356_15965 0.17 -0.5 3,612,802 + AO356_15965 0.17 -1.6 3,612,802 + AO356_15965 0.17 +0.1 3,612,802 + AO356_15965 0.17 +0.4 3,612,802 + AO356_15965 0.17 -2.2 3,612,802 + AO356_15965 0.17 +0.9 3,612,802 + AO356_15965 0.17 -1.2 3,612,803 - AO356_15965 0.17 -0.2 3,612,803 - AO356_15965 0.17 -1.4 3,612,803 - AO356_15965 0.17 +0.1 3,612,803 - AO356_15965 0.17 -1.0 3,612,803 - AO356_15965 0.17 +1.0 3,612,803 - AO356_15965 0.17 +0.2 3,612,803 - AO356_15965 0.17 +0.6 3,612,809 - AO356_15965 0.18 +0.2 3,612,975 + AO356_15965 0.31 -0.4 3,612,975 + AO356_15965 0.31 -0.4 3,612,975 + AO356_15965 0.31 -0.2 3,612,975 + AO356_15965 0.31 -0.3 3,612,976 - AO356_15965 0.31 -1.2 3,612,976 - AO356_15965 0.31 -0.3 3,612,987 + AO356_15965 0.32 +0.5 3,612,988 - AO356_15965 0.32 -0.9 3,612,988 - AO356_15965 0.32 -0.2 3,612,988 - AO356_15965 0.32 -0.8 3,612,988 - AO356_15965 0.32 +0.3 3,613,199 + AO356_15965 0.48 -1.3 3,613,286 - AO356_15965 0.55 -0.5 3,613,310 + AO356_15965 0.57 -0.5 3,613,311 - AO356_15965 0.57 -0.2 3,613,311 - AO356_15965 0.57 -0.0 3,613,411 + AO356_15965 0.64 +0.8 3,613,411 + AO356_15965 0.64 +0.2 3,613,412 - AO356_15965 0.64 -0.4 3,613,412 - AO356_15965 0.64 -0.4 3,613,412 - AO356_15965 0.64 -0.8
Or see this region's nucleotide sequence