Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05690

Experiment: Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05680 and AO356_05685 overlap by 19 nucleotidesAO356_05685 and AO356_05690 are separated by 24 nucleotidesAO356_05690 and AO356_05695 are separated by 13 nucleotides AO356_05680: AO356_05680 - lysozyme, at 1,268,890 to 1,269,426 _05680 AO356_05685: AO356_05685 - lysozyme, at 1,269,408 to 1,269,971 _05685 AO356_05690: AO356_05690 - hypothetical protein, at 1,269,996 to 1,270,427 _05690 AO356_05695: AO356_05695 - phage tail protein, at 1,270,441 to 1,271,352 _05695 Position (kb) 1269 1270 1271Strain fitness (log2 ratio) -2 -1 0 1 2at 1269.111 kb on + strand, within AO356_05680at 1269.111 kb on + strand, within AO356_05680at 1269.112 kb on - strand, within AO356_05680at 1269.112 kb on - strand, within AO356_05680at 1269.112 kb on - strand, within AO356_05680at 1269.256 kb on + strand, within AO356_05680at 1269.256 kb on + strand, within AO356_05680at 1269.256 kb on + strand, within AO356_05680at 1269.257 kb on - strand, within AO356_05680at 1269.257 kb on - strand, within AO356_05680at 1269.257 kb on - strand, within AO356_05680at 1269.311 kb on + strand, within AO356_05680at 1269.312 kb on - strand, within AO356_05680at 1269.370 kb on + strand, within AO356_05680at 1269.371 kb on - strand, within AO356_05680at 1269.390 kb on + strandat 1269.390 kb on + strandat 1269.391 kb on - strandat 1269.391 kb on - strandat 1269.426 kb on + strandat 1269.426 kb on + strandat 1269.426 kb on + strandat 1269.426 kb on + strandat 1269.426 kb on + strandat 1269.427 kb on - strandat 1269.655 kb on + strand, within AO356_05685at 1269.655 kb on + strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.656 kb on - strand, within AO356_05685at 1269.697 kb on + strand, within AO356_05685at 1269.697 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.763 kb on + strand, within AO356_05685at 1269.764 kb on - strand, within AO356_05685at 1269.764 kb on - strand, within AO356_05685at 1269.764 kb on - strand, within AO356_05685at 1269.775 kb on + strand, within AO356_05685at 1269.775 kb on + strand, within AO356_05685at 1269.775 kb on + strand, within AO356_05685at 1269.775 kb on + strand, within AO356_05685at 1269.776 kb on - strand, within AO356_05685at 1269.776 kb on - strand, within AO356_05685at 1269.776 kb on - strand, within AO356_05685at 1269.776 kb on - strand, within AO356_05685at 1269.802 kb on + strand, within AO356_05685at 1269.802 kb on + strand, within AO356_05685at 1269.803 kb on - strand, within AO356_05685at 1269.803 kb on - strand, within AO356_05685at 1269.905 kb on + strand, within AO356_05685at 1269.962 kb on + strandat 1269.962 kb on + strandat 1269.963 kb on - strandat 1269.963 kb on - strandat 1270.080 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.109 kb on - strand, within AO356_05690at 1270.130 kb on + strand, within AO356_05690at 1270.167 kb on + strand, within AO356_05690at 1270.167 kb on + strand, within AO356_05690at 1270.250 kb on + strand, within AO356_05690at 1270.250 kb on + strand, within AO356_05690at 1270.251 kb on - strand, within AO356_05690at 1270.289 kb on + strand, within AO356_05690at 1270.289 kb on + strand, within AO356_05690at 1270.318 kb on - strand, within AO356_05690at 1270.326 kb on - strand, within AO356_05690at 1270.326 kb on - strand, within AO356_05690at 1270.326 kb on - strand, within AO356_05690at 1270.328 kb on - strand, within AO356_05690at 1270.383 kb on - strand, within AO356_05690at 1270.391 kb on - strandat 1270.415 kb on - strandat 1270.418 kb on - strandat 1270.427 kb on + strandat 1270.427 kb on + strandat 1270.428 kb on - strandat 1270.428 kb on - strandat 1270.446 kb on - strandat 1270.493 kb on + strandat 1270.494 kb on - strandat 1270.506 kb on - strandat 1270.576 kb on + strand, within AO356_05695at 1270.576 kb on + strand, within AO356_05695at 1270.576 kb on + strand, within AO356_05695at 1270.577 kb on - strand, within AO356_05695at 1270.577 kb on - strand, within AO356_05695at 1270.577 kb on - strand, within AO356_05695at 1270.676 kb on + strand, within AO356_05695at 1270.676 kb on + strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.677 kb on - strand, within AO356_05695at 1270.800 kb on + strand, within AO356_05695at 1270.830 kb on + strand, within AO356_05695at 1270.864 kb on + strand, within AO356_05695at 1270.864 kb on + strand, within AO356_05695at 1270.865 kb on - strand, within AO356_05695at 1270.865 kb on - strand, within AO356_05695at 1270.876 kb on - strand, within AO356_05695at 1270.943 kb on - strand, within AO356_05695at 1270.943 kb on - strand, within AO356_05695at 1270.945 kb on - strand, within AO356_05695at 1270.986 kb on + strand, within AO356_05695at 1270.986 kb on + strand, within AO356_05695at 1270.987 kb on - strand, within AO356_05695at 1271.045 kb on + strand, within AO356_05695at 1271.045 kb on + strand, within AO356_05695at 1271.046 kb on - strand, within AO356_05695at 1271.063 kb on + strand, within AO356_05695at 1271.063 kb on + strand, within AO356_05695at 1271.064 kb on - strand, within AO356_05695at 1271.083 kb on + strand, within AO356_05695at 1271.083 kb on + strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.084 kb on - strand, within AO356_05695at 1271.087 kb on + strand, within AO356_05695at 1271.087 kb on + strand, within AO356_05695at 1271.087 kb on + strand, within AO356_05695at 1271.088 kb on - strand, within AO356_05695at 1271.088 kb on - strand, within AO356_05695at 1271.122 kb on + strand, within AO356_05695at 1271.163 kb on + strand, within AO356_05695at 1271.164 kb on - strand, within AO356_05695at 1271.173 kb on + strand, within AO356_05695at 1271.224 kb on + strand, within AO356_05695at 1271.225 kb on - strand, within AO356_05695at 1271.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 40 mM
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1,269,111 + AO356_05680 0.41 +1.1
1,269,111 + AO356_05680 0.41 +0.9
1,269,112 - AO356_05680 0.41 +0.3
1,269,112 - AO356_05680 0.41 -1.0
1,269,112 - AO356_05680 0.41 +1.3
1,269,256 + AO356_05680 0.68 -0.3
1,269,256 + AO356_05680 0.68 +0.7
1,269,256 + AO356_05680 0.68 -0.9
1,269,257 - AO356_05680 0.68 -0.7
1,269,257 - AO356_05680 0.68 -0.2
1,269,257 - AO356_05680 0.68 -0.3
1,269,311 + AO356_05680 0.78 -0.8
1,269,312 - AO356_05680 0.79 -0.2
1,269,370 + AO356_05680 0.89 +0.0
1,269,371 - AO356_05680 0.90 +0.5
1,269,390 + -0.8
1,269,390 + +0.2
1,269,391 - -0.0
1,269,391 - +0.5
1,269,426 + -1.5
1,269,426 + +0.3
1,269,426 + +0.2
1,269,426 + +0.6
1,269,426 + +0.6
1,269,427 - -0.8
1,269,655 + AO356_05685 0.44 -0.8
1,269,655 + AO356_05685 0.44 -0.0
1,269,656 - AO356_05685 0.44 -1.3
1,269,656 - AO356_05685 0.44 -2.5
1,269,656 - AO356_05685 0.44 -1.5
1,269,656 - AO356_05685 0.44 +0.4
1,269,656 - AO356_05685 0.44 -1.6
1,269,656 - AO356_05685 0.44 -1.1
1,269,697 + AO356_05685 0.51 -2.1
1,269,697 + AO356_05685 0.51 -0.4
1,269,763 + AO356_05685 0.63 -0.9
1,269,763 + AO356_05685 0.63 -0.6
1,269,763 + AO356_05685 0.63 +1.3
1,269,763 + AO356_05685 0.63 -0.9
1,269,763 + AO356_05685 0.63 -0.1
1,269,763 + AO356_05685 0.63 +0.5
1,269,763 + AO356_05685 0.63 -0.7
1,269,764 - AO356_05685 0.63 -0.3
1,269,764 - AO356_05685 0.63 +0.5
1,269,764 - AO356_05685 0.63 +0.1
1,269,775 + AO356_05685 0.65 +1.0
1,269,775 + AO356_05685 0.65 +0.1
1,269,775 + AO356_05685 0.65 -0.7
1,269,775 + AO356_05685 0.65 +0.4
1,269,776 - AO356_05685 0.65 -1.0
1,269,776 - AO356_05685 0.65 +0.5
1,269,776 - AO356_05685 0.65 -0.9
1,269,776 - AO356_05685 0.65 -0.3
1,269,802 + AO356_05685 0.70 +0.1
1,269,802 + AO356_05685 0.70 -0.1
1,269,803 - AO356_05685 0.70 -0.7
1,269,803 - AO356_05685 0.70 +0.2
1,269,905 + AO356_05685 0.88 -0.1
1,269,962 + +0.4
1,269,962 + +1.2
1,269,963 - -0.4
1,269,963 - -0.2
1,270,080 - AO356_05690 0.19 +1.4
1,270,109 - AO356_05690 0.26 -0.7
1,270,109 - AO356_05690 0.26 +0.1
1,270,109 - AO356_05690 0.26 -0.1
1,270,109 - AO356_05690 0.26 +0.6
1,270,109 - AO356_05690 0.26 -0.0
1,270,109 - AO356_05690 0.26 +0.2
1,270,130 + AO356_05690 0.31 +0.7
1,270,167 + AO356_05690 0.40 -1.5
1,270,167 + AO356_05690 0.40 -0.0
1,270,250 + AO356_05690 0.59 +0.2
1,270,250 + AO356_05690 0.59 +0.3
1,270,251 - AO356_05690 0.59 +1.8
1,270,289 + AO356_05690 0.68 -0.1
1,270,289 + AO356_05690 0.68 -0.3
1,270,318 - AO356_05690 0.75 -0.4
1,270,326 - AO356_05690 0.76 +0.4
1,270,326 - AO356_05690 0.76 -2.1
1,270,326 - AO356_05690 0.76 +0.5
1,270,328 - AO356_05690 0.77 +1.3
1,270,383 - AO356_05690 0.90 +0.8
1,270,391 - -0.2
1,270,415 - -0.0
1,270,418 - -0.4
1,270,427 + +0.1
1,270,427 + +0.8
1,270,428 - -0.0
1,270,428 - +0.7
1,270,446 - +0.2
1,270,493 + -0.7
1,270,494 - -0.3
1,270,506 - -0.8
1,270,576 + AO356_05695 0.15 -1.5
1,270,576 + AO356_05695 0.15 -0.4
1,270,576 + AO356_05695 0.15 +0.2
1,270,577 - AO356_05695 0.15 +0.1
1,270,577 - AO356_05695 0.15 +0.5
1,270,577 - AO356_05695 0.15 +0.3
1,270,676 + AO356_05695 0.26 -0.6
1,270,676 + AO356_05695 0.26 +0.7
1,270,677 - AO356_05695 0.26 -0.4
1,270,677 - AO356_05695 0.26 -0.1
1,270,677 - AO356_05695 0.26 +0.9
1,270,677 - AO356_05695 0.26 -2.1
1,270,677 - AO356_05695 0.26 -0.3
1,270,677 - AO356_05695 0.26 -0.7
1,270,800 + AO356_05695 0.39 -0.5
1,270,830 + AO356_05695 0.43 +0.3
1,270,864 + AO356_05695 0.46 +0.4
1,270,864 + AO356_05695 0.46 -0.4
1,270,865 - AO356_05695 0.46 +0.4
1,270,865 - AO356_05695 0.46 +0.6
1,270,876 - AO356_05695 0.48 -0.2
1,270,943 - AO356_05695 0.55 -0.8
1,270,943 - AO356_05695 0.55 -0.7
1,270,945 - AO356_05695 0.55 +0.4
1,270,986 + AO356_05695 0.60 -0.0
1,270,986 + AO356_05695 0.60 +0.1
1,270,987 - AO356_05695 0.60 +1.3
1,271,045 + AO356_05695 0.66 -1.8
1,271,045 + AO356_05695 0.66 +1.1
1,271,046 - AO356_05695 0.66 +0.8
1,271,063 + AO356_05695 0.68 -0.6
1,271,063 + AO356_05695 0.68 -1.9
1,271,064 - AO356_05695 0.68 -1.5
1,271,083 + AO356_05695 0.70 -0.3
1,271,083 + AO356_05695 0.70 +0.3
1,271,084 - AO356_05695 0.71 +0.5
1,271,084 - AO356_05695 0.71 -0.6
1,271,084 - AO356_05695 0.71 +0.5
1,271,084 - AO356_05695 0.71 -0.9
1,271,084 - AO356_05695 0.71 -0.6
1,271,084 - AO356_05695 0.71 -0.5
1,271,087 + AO356_05695 0.71 +1.5
1,271,087 + AO356_05695 0.71 +0.9
1,271,087 + AO356_05695 0.71 -0.4
1,271,088 - AO356_05695 0.71 -0.1
1,271,088 - AO356_05695 0.71 +0.0
1,271,122 + AO356_05695 0.75 -0.3
1,271,163 + AO356_05695 0.79 -2.1
1,271,164 - AO356_05695 0.79 -1.1
1,271,173 + AO356_05695 0.80 +0.2
1,271,224 + AO356_05695 0.86 +1.1
1,271,225 - AO356_05695 0.86 -0.3
1,271,328 + -0.1

Or see this region's nucleotide sequence