Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03430

Experiment: Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03425 and AO356_03430 are separated by 176 nucleotidesAO356_03430 and AO356_03435 are separated by 26 nucleotidesAO356_03435 and AO356_03440 are separated by 144 nucleotidesAO356_03440 and AO356_03445 are separated by 231 nucleotides AO356_03425: AO356_03425 - chain-length determining protein, at 762,784 to 763,839 _03425 AO356_03430: AO356_03430 - hypothetical protein, at 764,016 to 764,240 _03430 AO356_03435: AO356_03435 - integration host factor subunit beta, at 764,267 to 764,563 _03435 AO356_03440: AO356_03440 - hypothetical protein, at 764,708 to 764,986 _03440 AO356_03445: AO356_03445 - 30S ribosomal protein S1, at 765,218 to 766,912 _03445 Position (kb) 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 763.104 kb on + strand, within AO356_03425at 763.123 kb on + strand, within AO356_03425at 763.123 kb on + strand, within AO356_03425at 763.124 kb on - strand, within AO356_03425at 763.124 kb on - strand, within AO356_03425at 763.125 kb on + strand, within AO356_03425at 763.125 kb on + strand, within AO356_03425at 763.147 kb on + strand, within AO356_03425at 763.255 kb on - strand, within AO356_03425at 763.255 kb on - strand, within AO356_03425at 763.255 kb on - strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.346 kb on + strand, within AO356_03425at 763.347 kb on - strand, within AO356_03425at 763.347 kb on - strand, within AO356_03425at 763.347 kb on - strand, within AO356_03425at 763.347 kb on - strand, within AO356_03425at 763.366 kb on - strand, within AO356_03425at 763.366 kb on - strand, within AO356_03425at 763.417 kb on - strand, within AO356_03425at 763.438 kb on + strand, within AO356_03425at 763.438 kb on + strand, within AO356_03425at 763.438 kb on + strand, within AO356_03425at 763.439 kb on - strand, within AO356_03425at 763.463 kb on + strand, within AO356_03425at 763.464 kb on - strand, within AO356_03425at 763.515 kb on - strand, within AO356_03425at 763.570 kb on + strand, within AO356_03425at 763.571 kb on - strand, within AO356_03425at 763.577 kb on + strand, within AO356_03425at 763.595 kb on + strand, within AO356_03425at 763.628 kb on + strand, within AO356_03425at 763.629 kb on - strand, within AO356_03425at 763.629 kb on - strand, within AO356_03425at 763.629 kb on - strand, within AO356_03425at 763.644 kb on + strand, within AO356_03425at 763.669 kb on - strand, within AO356_03425at 763.703 kb on + strand, within AO356_03425at 763.703 kb on + strand, within AO356_03425at 763.710 kb on - strand, within AO356_03425at 763.894 kb on + strandat 763.895 kb on - strandat 763.934 kb on - strandat 763.934 kb on - strandat 763.986 kb on + strandat 763.987 kb on - strandat 763.998 kb on - strandat 764.010 kb on + strandat 764.011 kb on - strandat 764.017 kb on + strandat 764.018 kb on - strandat 764.030 kb on + strandat 764.067 kb on + strand, within AO356_03430at 764.068 kb on - strand, within AO356_03430at 764.068 kb on - strand, within AO356_03430at 764.072 kb on + strand, within AO356_03430at 764.072 kb on + strand, within AO356_03430at 764.072 kb on + strand, within AO356_03430at 764.073 kb on - strand, within AO356_03430at 764.073 kb on - strand, within AO356_03430at 764.170 kb on - strand, within AO356_03430at 764.199 kb on + strand, within AO356_03430at 764.199 kb on + strand, within AO356_03430at 764.256 kb on + strandat 764.256 kb on + strandat 764.306 kb on - strand, within AO356_03435at 764.306 kb on - strand, within AO356_03435at 764.306 kb on - strand, within AO356_03435at 764.385 kb on - strand, within AO356_03435at 764.400 kb on + strand, within AO356_03435at 764.613 kb on + strandat 764.614 kb on - strandat 764.645 kb on + strandat 764.645 kb on + strandat 764.645 kb on + strandat 764.645 kb on + strandat 764.646 kb on - strandat 764.646 kb on - strandat 764.731 kb on + strandat 764.732 kb on - strandat 764.732 kb on - strandat 764.732 kb on - strandat 764.732 kb on - strandat 764.732 kb on - strandat 764.742 kb on + strand, within AO356_03440at 764.770 kb on - strand, within AO356_03440at 764.814 kb on + strand, within AO356_03440at 764.814 kb on + strand, within AO356_03440at 764.815 kb on - strand, within AO356_03440at 764.848 kb on + strand, within AO356_03440at 764.848 kb on + strand, within AO356_03440at 764.849 kb on - strand, within AO356_03440at 764.849 kb on - strand, within AO356_03440at 764.980 kb on + strandat 764.980 kb on + strandat 764.980 kb on + strandat 764.980 kb on + strandat 764.980 kb on + strandat 764.980 kb on + strandat 764.981 kb on - strandat 764.981 kb on - strandat 765.022 kb on + strandat 765.022 kb on + strandat 765.022 kb on + strandat 765.022 kb on + strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.023 kb on - strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.024 kb on + strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.025 kb on - strandat 765.049 kb on - strandat 765.067 kb on + strandat 765.067 kb on + strandat 765.067 kb on + strandat 765.068 kb on - strandat 765.068 kb on - strandat 765.155 kb on - strandat 765.155 kb on - strandat 765.161 kb on + strandat 765.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 40 mM
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763,104 + AO356_03425 0.30 +0.9
763,123 + AO356_03425 0.32 -1.5
763,123 + AO356_03425 0.32 +0.5
763,124 - AO356_03425 0.32 -1.0
763,124 - AO356_03425 0.32 -0.3
763,125 + AO356_03425 0.32 -0.5
763,125 + AO356_03425 0.32 -2.2
763,147 + AO356_03425 0.34 -0.7
763,255 - AO356_03425 0.45 -1.6
763,255 - AO356_03425 0.45 -0.7
763,255 - AO356_03425 0.45 +0.3
763,346 + AO356_03425 0.53 -1.3
763,346 + AO356_03425 0.53 -2.8
763,346 + AO356_03425 0.53 -1.1
763,346 + AO356_03425 0.53 -2.3
763,346 + AO356_03425 0.53 +0.3
763,346 + AO356_03425 0.53 -1.4
763,347 - AO356_03425 0.53 -2.8
763,347 - AO356_03425 0.53 -0.1
763,347 - AO356_03425 0.53 -2.1
763,347 - AO356_03425 0.53 -1.2
763,366 - AO356_03425 0.55 +1.2
763,366 - AO356_03425 0.55 -0.9
763,417 - AO356_03425 0.60 -0.5
763,438 + AO356_03425 0.62 -1.0
763,438 + AO356_03425 0.62 +0.3
763,438 + AO356_03425 0.62 -0.0
763,439 - AO356_03425 0.62 -0.7
763,463 + AO356_03425 0.64 -0.1
763,464 - AO356_03425 0.64 -0.8
763,515 - AO356_03425 0.69 -0.8
763,570 + AO356_03425 0.74 -1.7
763,571 - AO356_03425 0.75 -1.8
763,577 + AO356_03425 0.75 -1.5
763,595 + AO356_03425 0.77 -1.0
763,628 + AO356_03425 0.80 +0.1
763,629 - AO356_03425 0.80 -1.1
763,629 - AO356_03425 0.80 +0.4
763,629 - AO356_03425 0.80 +0.0
763,644 + AO356_03425 0.81 +0.2
763,669 - AO356_03425 0.84 -1.0
763,703 + AO356_03425 0.87 -0.1
763,703 + AO356_03425 0.87 -0.4
763,710 - AO356_03425 0.88 -1.9
763,894 + +0.3
763,895 - -0.3
763,934 - -1.1
763,934 - +0.1
763,986 + -0.4
763,987 - +0.2
763,998 - +0.2
764,010 + -1.8
764,011 - -0.5
764,017 + -0.3
764,018 - -1.1
764,030 + -0.8
764,067 + AO356_03430 0.23 -0.1
764,068 - AO356_03430 0.23 -0.2
764,068 - AO356_03430 0.23 -0.5
764,072 + AO356_03430 0.25 +0.2
764,072 + AO356_03430 0.25 -0.8
764,072 + AO356_03430 0.25 -1.7
764,073 - AO356_03430 0.25 -1.3
764,073 - AO356_03430 0.25 -0.3
764,170 - AO356_03430 0.68 -0.6
764,199 + AO356_03430 0.81 -1.5
764,199 + AO356_03430 0.81 -1.9
764,256 + -1.1
764,256 + -1.1
764,306 - AO356_03435 0.13 +0.1
764,306 - AO356_03435 0.13 -0.1
764,306 - AO356_03435 0.13 +0.5
764,385 - AO356_03435 0.40 -1.8
764,400 + AO356_03435 0.45 -1.4
764,613 + -0.8
764,614 - +1.1
764,645 + -0.8
764,645 + -0.0
764,645 + +0.1
764,645 + -1.1
764,646 - +0.8
764,646 - +1.5
764,731 + -0.1
764,732 - +0.5
764,732 - +1.4
764,732 - -1.1
764,732 - +0.9
764,732 - +0.7
764,742 + AO356_03440 0.12 -0.3
764,770 - AO356_03440 0.22 +0.3
764,814 + AO356_03440 0.38 -1.5
764,814 + AO356_03440 0.38 -0.2
764,815 - AO356_03440 0.38 -1.0
764,848 + AO356_03440 0.50 +0.1
764,848 + AO356_03440 0.50 +0.3
764,849 - AO356_03440 0.51 +0.4
764,849 - AO356_03440 0.51 +0.1
764,980 + -0.8
764,980 + +0.5
764,980 + -1.7
764,980 + -0.8
764,980 + -1.0
764,980 + -0.5
764,981 - -0.1
764,981 - +0.7
765,022 + +0.9
765,022 + +0.3
765,022 + -0.4
765,022 + -1.5
765,023 - +0.5
765,023 - -1.1
765,023 - +0.5
765,023 - -0.1
765,023 - +1.4
765,023 - -0.8
765,023 - +0.5
765,023 - -0.6
765,023 - +0.2
765,023 - +0.2
765,023 - +0.5
765,024 + +0.6
765,024 + +0.1
765,024 + +0.2
765,024 + +1.1
765,024 + -0.3
765,024 + -0.4
765,024 + -1.1
765,025 - -0.9
765,025 - -0.4
765,025 - -0.5
765,025 - -0.3
765,025 - -0.2
765,025 - +0.2
765,025 - +0.0
765,049 - +1.9
765,067 + +0.8
765,067 + -0.2
765,067 + -0.3
765,068 - +0.6
765,068 - +0.5
765,155 - -0.7
765,155 - -0.7
765,161 + -0.1
765,162 - +1.1

Or see this region's nucleotide sequence