Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01790 and AO356_01795 are separated by 469 nucleotides AO356_01795 and AO356_01800 are separated by 26 nucleotides AO356_01800 and AO356_01805 are separated by 140 nucleotides
AO356_01790: AO356_01790 - hypothetical protein, at 401,388 to 402,065
_01790
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562
_01800
AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599
_01805
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.686 kb on + strand, within AO356_01790 at 401.755 kb on + strand, within AO356_01790 at 401.771 kb on - strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.792 kb on + strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.793 kb on - strand, within AO356_01790 at 401.880 kb on + strand, within AO356_01790 at 401.911 kb on + strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.912 kb on - strand, within AO356_01790 at 401.926 kb on + strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.927 kb on - strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.939 kb on + strand, within AO356_01790 at 401.940 kb on - strand, within AO356_01790 at 401.983 kb on - strand, within AO356_01790 at 402.030 kb on + strand at 402.121 kb on + strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.122 kb on - strand at 402.143 kb on - strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.144 kb on + strand at 402.145 kb on - strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.150 kb on + strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.151 kb on - strand at 402.162 kb on + strand at 402.173 kb on + strand at 402.174 kb on - strand at 402.174 kb on - strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.247 kb on + strand at 402.247 kb on + strand at 402.248 kb on - strand at 402.248 kb on - strand at 402.276 kb on - strand at 402.276 kb on - strand at 402.321 kb on + strand at 402.322 kb on - strand at 402.322 kb on - strand at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.623 kb on + strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.624 kb on - strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.627 kb on + strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.628 kb on - strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.629 kb on + strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.630 kb on - strand, within AO356_01795 at 402.640 kb on + strand, within AO356_01795 at 402.641 kb on - strand, within AO356_01795 at 403.154 kb on - strand, within AO356_01795 at 403.204 kb on + strand, within AO356_01795 at 403.205 kb on - strand, within AO356_01795 at 403.271 kb on - strand at 403.277 kb on + strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.555 kb on + strand at 403.555 kb on + strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.586 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.713 kb on - strand at 403.713 kb on - strand at 403.727 kb on + strand at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.834 kb on + strand, within AO356_01805 at 403.835 kb on - strand, within AO356_01805 at 403.905 kb on - strand, within AO356_01805 at 404.025 kb on - strand, within AO356_01805
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 401,686 + AO356_01790 0.44 -0.7 401,686 + AO356_01790 0.44 +0.3 401,686 + AO356_01790 0.44 -0.3 401,755 + AO356_01790 0.54 +0.3 401,771 - AO356_01790 0.56 -2.0 401,792 + AO356_01790 0.60 -1.3 401,792 + AO356_01790 0.60 -0.5 401,792 + AO356_01790 0.60 -0.6 401,792 + AO356_01790 0.60 -0.1 401,792 + AO356_01790 0.60 -1.0 401,792 + AO356_01790 0.60 -0.4 401,793 - AO356_01790 0.60 +1.2 401,793 - AO356_01790 0.60 +0.2 401,793 - AO356_01790 0.60 -1.0 401,793 - AO356_01790 0.60 -0.5 401,880 + AO356_01790 0.73 +0.4 401,911 + AO356_01790 0.77 -0.5 401,912 - AO356_01790 0.77 -0.4 401,912 - AO356_01790 0.77 +2.2 401,926 + AO356_01790 0.79 -0.2 401,927 - AO356_01790 0.79 -0.5 401,927 - AO356_01790 0.79 -0.9 401,939 + AO356_01790 0.81 +0.4 401,939 + AO356_01790 0.81 +0.2 401,940 - AO356_01790 0.81 -0.4 401,983 - AO356_01790 0.88 -0.2 402,030 + -0.5 402,121 + -0.2 402,122 - +0.2 402,122 - +0.5 402,122 - -0.5 402,122 - +1.8 402,122 - -0.9 402,143 - +0.6 402,144 + +0.3 402,144 + -1.3 402,144 + -0.3 402,145 - -0.5 402,150 + +0.7 402,150 + -0.2 402,150 + +0.5 402,150 + -0.7 402,151 - +0.2 402,151 - +0.5 402,151 - -0.1 402,151 - +0.7 402,151 - +0.6 402,151 - -0.5 402,151 - +0.2 402,162 + -1.0 402,173 + -2.0 402,174 - +0.2 402,174 - +0.2 402,233 + -1.2 402,233 + -0.7 402,234 - +0.7 402,247 + -1.5 402,247 + -0.6 402,248 - -0.2 402,248 - +0.0 402,276 - +1.8 402,276 - +0.8 402,321 + -1.2 402,322 - -0.6 402,322 - +0.3 402,623 + AO356_01795 0.12 +1.7 402,623 + AO356_01795 0.12 +0.8 402,623 + AO356_01795 0.12 -1.0 402,623 + AO356_01795 0.12 +0.2 402,623 + AO356_01795 0.12 -0.2 402,624 - AO356_01795 0.12 +0.1 402,624 - AO356_01795 0.12 -0.2 402,624 - AO356_01795 0.12 -0.2 402,627 + AO356_01795 0.12 -0.4 402,627 + AO356_01795 0.12 -1.9 402,627 + AO356_01795 0.12 -1.4 402,627 + AO356_01795 0.12 +0.3 402,627 + AO356_01795 0.12 -0.9 402,628 - AO356_01795 0.12 +0.9 402,628 - AO356_01795 0.12 -0.5 402,628 - AO356_01795 0.12 +2.3 402,628 - AO356_01795 0.12 +0.3 402,628 - AO356_01795 0.12 -1.4 402,628 - AO356_01795 0.12 +2.0 402,628 - AO356_01795 0.12 -0.5 402,629 + AO356_01795 0.13 -0.2 402,629 + AO356_01795 0.13 -0.7 402,629 + AO356_01795 0.13 -0.3 402,629 + AO356_01795 0.13 -1.1 402,629 + AO356_01795 0.13 -0.5 402,629 + AO356_01795 0.13 +2.0 402,629 + AO356_01795 0.13 +0.3 402,630 - AO356_01795 0.13 +0.1 402,630 - AO356_01795 0.13 -1.4 402,630 - AO356_01795 0.13 +1.2 402,630 - AO356_01795 0.13 -0.6 402,630 - AO356_01795 0.13 -1.1 402,630 - AO356_01795 0.13 +0.1 402,640 + AO356_01795 0.14 +1.0 402,641 - AO356_01795 0.14 +0.4 403,154 - AO356_01795 0.83 +0.2 403,204 + AO356_01795 0.89 -3.1 403,205 - AO356_01795 0.89 -0.0 403,271 - +0.0 403,277 + -0.4 403,278 - +0.2 403,278 - +0.7 403,278 - +0.5 403,312 + -0.2 403,312 + -0.1 403,312 + -0.4 403,312 + +0.2 403,555 + +1.2 403,555 + -1.1 403,556 - -0.7 403,556 - +0.7 403,556 - -0.3 403,556 - -0.3 403,556 - -0.5 403,556 - -0.6 403,586 + -1.8 403,628 + -0.5 403,628 + -1.3 403,628 + +0.4 403,628 + +0.4 403,628 + +0.1 403,628 + -0.1 403,628 + +1.9 403,628 + +1.0 403,628 + -0.2 403,628 + -0.3 403,628 + -0.2 403,628 + +0.3 403,628 + +0.2 403,629 - +0.7 403,629 - +0.2 403,629 - -1.9 403,629 - +0.6 403,713 - -0.4 403,713 - -0.0 403,727 + -0.6 403,832 + AO356_01805 0.14 +0.7 403,832 + AO356_01805 0.14 +1.8 403,832 + AO356_01805 0.14 +0.0 403,832 + AO356_01805 0.14 -2.0 403,832 + AO356_01805 0.14 -0.7 403,832 + AO356_01805 0.14 +0.6 403,832 + AO356_01805 0.14 +0.9 403,832 + AO356_01805 0.14 +0.2 403,833 - AO356_01805 0.14 -0.3 403,833 - AO356_01805 0.14 -0.2 403,833 - AO356_01805 0.14 +1.0 403,833 - AO356_01805 0.14 +1.5 403,833 - AO356_01805 0.14 -0.4 403,834 + AO356_01805 0.15 -0.0 403,835 - AO356_01805 0.15 +1.0 403,905 - AO356_01805 0.23 +0.7 404,025 - AO356_01805 0.36 -1.0
Or see this region's nucleotide sequence