Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01665 and AO356_01670 are separated by 18 nucleotides AO356_01670 and AO356_01675 are separated by 233 nucleotides
AO356_01665: AO356_01665 - FAD-binding oxidoreductase, at 373,894 to 375,009
_01665
AO356_01670: AO356_01670 - spermidine/putrescine ABC transporter substrate-binding protein, at 375,028 to 376,089
_01670
AO356_01675: AO356_01675 - protein kinase, at 376,323 to 377,648
_01675
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1 at 374.200 kb on + strand, within AO356_01665 at 374.200 kb on + strand, within AO356_01665 at 374.200 kb on + strand, within AO356_01665 at 374.201 kb on - strand, within AO356_01665 at 374.442 kb on - strand, within AO356_01665 at 374.442 kb on - strand, within AO356_01665 at 374.626 kb on - strand, within AO356_01665 at 374.629 kb on + strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.630 kb on - strand, within AO356_01665 at 374.660 kb on + strand, within AO356_01665 at 374.661 kb on - strand, within AO356_01665 at 374.661 kb on - strand, within AO356_01665 at 374.810 kb on - strand, within AO356_01665 at 374.861 kb on + strand, within AO356_01665 at 375.010 kb on + strand at 375.011 kb on - strand at 375.011 kb on - strand at 375.034 kb on - strand at 375.133 kb on + strand at 375.169 kb on + strand, within AO356_01670 at 375.210 kb on + strand, within AO356_01670 at 375.210 kb on + strand, within AO356_01670 at 375.211 kb on - strand, within AO356_01670 at 375.211 kb on - strand, within AO356_01670 at 375.319 kb on + strand, within AO356_01670 at 375.320 kb on - strand, within AO356_01670 at 375.396 kb on + strand, within AO356_01670 at 375.445 kb on + strand, within AO356_01670 at 375.445 kb on + strand, within AO356_01670 at 375.446 kb on - strand, within AO356_01670 at 375.480 kb on + strand, within AO356_01670 at 375.481 kb on - strand, within AO356_01670 at 375.670 kb on + strand, within AO356_01670 at 375.671 kb on - strand, within AO356_01670 at 375.693 kb on - strand, within AO356_01670 at 375.704 kb on + strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.705 kb on - strand, within AO356_01670 at 375.784 kb on + strand, within AO356_01670 at 375.785 kb on - strand, within AO356_01670 at 376.227 kb on - strand at 376.252 kb on - strand at 376.252 kb on - strand at 376.343 kb on - strand at 376.343 kb on - strand at 376.861 kb on - strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.037 kb on + strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675 at 377.038 kb on - strand, within AO356_01675
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 374,200 + AO356_01665 0.27 +0.8 374,200 + AO356_01665 0.27 +0.2 374,200 + AO356_01665 0.27 +1.0 374,201 - AO356_01665 0.28 -1.0 374,442 - AO356_01665 0.49 +0.2 374,442 - AO356_01665 0.49 -0.5 374,626 - AO356_01665 0.66 +0.6 374,629 + AO356_01665 0.66 +1.2 374,630 - AO356_01665 0.66 +0.4 374,630 - AO356_01665 0.66 -0.0 374,630 - AO356_01665 0.66 -0.6 374,630 - AO356_01665 0.66 -0.2 374,660 + AO356_01665 0.69 -0.3 374,661 - AO356_01665 0.69 +0.8 374,661 - AO356_01665 0.69 -0.0 374,810 - AO356_01665 0.82 +0.2 374,861 + AO356_01665 0.87 -0.2 375,010 + -0.3 375,011 - -0.5 375,011 - +0.1 375,034 - -0.4 375,133 + +0.3 375,169 + AO356_01670 0.13 +0.3 375,210 + AO356_01670 0.17 +0.9 375,210 + AO356_01670 0.17 +0.7 375,211 - AO356_01670 0.17 +0.2 375,211 - AO356_01670 0.17 -0.5 375,319 + AO356_01670 0.27 -0.4 375,320 - AO356_01670 0.27 -1.1 375,396 + AO356_01670 0.35 -1.4 375,445 + AO356_01670 0.39 +1.2 375,445 + AO356_01670 0.39 -0.7 375,446 - AO356_01670 0.39 +0.5 375,480 + AO356_01670 0.43 -0.5 375,481 - AO356_01670 0.43 +0.2 375,670 + AO356_01670 0.60 -0.3 375,671 - AO356_01670 0.61 -0.1 375,693 - AO356_01670 0.63 +0.6 375,704 + AO356_01670 0.64 -1.3 375,705 - AO356_01670 0.64 +0.9 375,705 - AO356_01670 0.64 -0.1 375,705 - AO356_01670 0.64 +0.1 375,784 + AO356_01670 0.71 +0.3 375,785 - AO356_01670 0.71 +1.3 376,227 - +0.3 376,252 - -0.2 376,252 - +0.3 376,343 - +1.1 376,343 - +0.3 376,861 - AO356_01675 0.41 -0.3 377,037 + AO356_01675 0.54 +0.3 377,037 + AO356_01675 0.54 +0.8 377,038 - AO356_01675 0.54 +1.2 377,038 - AO356_01675 0.54 +1.5 377,038 - AO356_01675 0.54 -0.5 377,038 - AO356_01675 0.54 -1.1 377,038 - AO356_01675 0.54 -0.7 377,038 - AO356_01675 0.54 -0.4 377,038 - AO356_01675 0.54 -0.0
Or see this region's nucleotide sequence