Strain Fitness in Shewanella loihica PV-4 around Shew_1651

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgltA and Shew_1651 are separated by 412 nucleotidesShew_1651 and Shew_1652 overlap by 7 nucleotidesShew_1652 and sdhA are separated by 0 nucleotides Shew_1650: gltA - type II citrate synthase (RefSeq), at 1,897,131 to 1,898,417 gltA Shew_1651: Shew_1651 - succinate dehydrogenase, cytochrome b subunit (RefSeq), at 1,898,830 to 1,899,225 _1651 Shew_1652: Shew_1652 - putative succinate dehydrogenase, hydrophobic subunit (RefSeq), at 1,899,219 to 1,899,566 _1652 Shew_1653: sdhA - succinate dehydrogenase flavoprotein subunit (RefSeq), at 1,899,567 to 1,901,333 sdhA Position (kb) 1898 1899 1900Strain fitness (log2 ratio) -1 0 1at 1898.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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1,898,413 + +1.5

Or see this region's nucleotide sequence