Strain Fitness in Shewanella loihica PV-4 around Shew_1193

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1192 and Shew_1193 are separated by 2 nucleotidesShew_1193 and Shew_1194 are separated by 209 nucleotidesShew_1194 and Shew_1195 are separated by 91 nucleotides Shew_1192: Shew_1192 - thiamine-monophosphate kinase (RefSeq), at 1,383,674 to 1,384,645 _1192 Shew_1193: Shew_1193 - phosphatidylglycerophosphatase (RefSeq), at 1,384,648 to 1,385,142 _1193 Shew_1194: Shew_1194 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 1,385,352 to 1,385,789 _1194 Shew_1195: Shew_1195 - hypothetical protein (RefSeq), at 1,385,881 to 1,387,086 _1195 Position (kb) 1384 1385 1386Strain fitness (log2 ratio) -1 0 1at 1383.666 kb on + strandat 1385.244 kb on - strandat 1385.356 kb on - strandat 1385.621 kb on - strand, within Shew_1194at 1385.632 kb on - strand, within Shew_1194at 1385.703 kb on - strand, within Shew_1194at 1385.825 kb on + strandat 1385.848 kb on + strandat 1386.038 kb on - strand, within Shew_1195

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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1,383,666 + +0.4
1,385,244 - +0.3
1,385,356 - +0.1
1,385,621 - Shew_1194 0.61 +0.2
1,385,632 - Shew_1194 0.64 -0.0
1,385,703 - Shew_1194 0.80 +1.2
1,385,825 + +0.1
1,385,848 + -1.2
1,386,038 - Shew_1195 0.13 +0.7

Or see this region's nucleotide sequence