Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0456 and Shew_0457 are separated by 135 nucleotides Shew_0457 and Shew_0458 are separated by 365 nucleotides
Shew_0456: Shew_0456 - hypothetical protein (RefSeq), at 506,342 to 507,226
_0456
Shew_0457: Shew_0457 - ATP-dependent helicase HepA (RefSeq), at 507,362 to 510,268
_0457
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Position (kb) 507
508
509
510
511 Strain fitness (log2 ratio) -2
-1
0
1 at 506.383 kb on - strand at 506.406 kb on + strand at 506.542 kb on - strand, within Shew_0456 at 506.561 kb on - strand, within Shew_0456 at 506.617 kb on - strand, within Shew_0456 at 506.621 kb on + strand, within Shew_0456 at 506.634 kb on - strand, within Shew_0456 at 506.746 kb on + strand, within Shew_0456 at 506.861 kb on + strand, within Shew_0456 at 506.919 kb on - strand, within Shew_0456 at 506.933 kb on + strand, within Shew_0456 at 507.040 kb on + strand, within Shew_0456 at 507.079 kb on + strand, within Shew_0456 at 507.137 kb on - strand, within Shew_0456 at 507.142 kb on - strand at 507.192 kb on + strand at 507.277 kb on - strand at 507.517 kb on + strand at 507.633 kb on + strand at 507.910 kb on - strand, within Shew_0457 at 508.009 kb on + strand, within Shew_0457 at 508.059 kb on - strand, within Shew_0457 at 508.106 kb on + strand, within Shew_0457 at 508.207 kb on + strand, within Shew_0457 at 508.460 kb on - strand, within Shew_0457 at 508.929 kb on + strand, within Shew_0457 at 508.929 kb on + strand, within Shew_0457 at 508.937 kb on - strand, within Shew_0457 at 508.937 kb on - strand, within Shew_0457 at 508.950 kb on + strand, within Shew_0457 at 509.203 kb on - strand, within Shew_0457 at 509.529 kb on + strand, within Shew_0457 at 509.721 kb on + strand, within Shew_0457 at 509.768 kb on + strand, within Shew_0457 at 509.787 kb on - strand, within Shew_0457 at 509.828 kb on + strand, within Shew_0457 at 509.842 kb on + strand, within Shew_0457 at 509.985 kb on - strand at 510.243 kb on - strand at 510.623 kb on - strand at 510.740 kb on - strand at 510.740 kb on - strand at 510.848 kb on - strand, within Shew_0458 at 510.987 kb on + strand, within Shew_0458 at 510.995 kb on - strand, within Shew_0458 at 511.065 kb on + strand, within Shew_0458
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 506,383 - -0.1 506,406 + +0.2 506,542 - Shew_0456 0.23 +0.0 506,561 - Shew_0456 0.25 +0.2 506,617 - Shew_0456 0.31 +0.1 506,621 + Shew_0456 0.32 +0.2 506,634 - Shew_0456 0.33 +0.3 506,746 + Shew_0456 0.46 -0.8 506,861 + Shew_0456 0.59 +1.3 506,919 - Shew_0456 0.65 +0.1 506,933 + Shew_0456 0.67 +0.0 507,040 + Shew_0456 0.79 -0.1 507,079 + Shew_0456 0.83 -0.4 507,137 - Shew_0456 0.90 +0.1 507,142 - +0.2 507,192 + +0.1 507,277 - +0.1 507,517 + -0.3 507,633 + -0.4 507,910 - Shew_0457 0.19 -0.4 508,009 + Shew_0457 0.22 -0.6 508,059 - Shew_0457 0.24 -0.5 508,106 + Shew_0457 0.26 -1.2 508,207 + Shew_0457 0.29 +0.5 508,460 - Shew_0457 0.38 -0.2 508,929 + Shew_0457 0.54 +0.0 508,929 + Shew_0457 0.54 -0.6 508,937 - Shew_0457 0.54 -0.5 508,937 - Shew_0457 0.54 -0.8 508,950 + Shew_0457 0.55 -0.7 509,203 - Shew_0457 0.63 -0.5 509,529 + Shew_0457 0.75 -0.2 509,721 + Shew_0457 0.81 -0.6 509,768 + Shew_0457 0.83 -1.5 509,787 - Shew_0457 0.83 -1.0 509,828 + Shew_0457 0.85 -0.5 509,842 + Shew_0457 0.85 +0.1 509,985 - -0.3 510,243 - -0.1 510,623 - -0.4 510,740 - -1.8 510,740 - -0.1 510,848 - Shew_0458 0.15 +0.1 510,987 + Shew_0458 0.25 +0.0 510,995 - Shew_0458 0.26 -0.2 511,065 + Shew_0458 0.31 +0.2
Or see this region's nucleotide sequence