Strain Fitness in Shewanella loihica PV-4 around Shew_0453

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0452 and Shew_0453 are separated by 13 nucleotidesShew_0453 and Shew_0454 are separated by 405 nucleotides Shew_0452: Shew_0452 - diguanylate cyclase (RefSeq), at 502,430 to 503,401 _0452 Shew_0453: Shew_0453 - response regulator receiver protein (RefSeq), at 503,415 to 504,410 _0453 Shew_0454: Shew_0454 - enoyl-CoA hydratase (RefSeq), at 504,816 to 505,625 _0454 Position (kb) 503 504 505Strain fitness (log2 ratio) -1 0 1 2 3at 502.430 kb on + strandat 502.568 kb on + strand, within Shew_0452at 502.916 kb on + strand, within Shew_0452at 502.934 kb on + strand, within Shew_0452at 503.335 kb on + strandat 503.342 kb on + strandat 503.343 kb on - strandat 503.402 kb on + strandat 503.421 kb on - strandat 503.430 kb on + strandat 503.719 kb on + strand, within Shew_0453at 503.761 kb on - strand, within Shew_0453at 504.038 kb on + strand, within Shew_0453at 504.055 kb on + strand, within Shew_0453at 504.839 kb on + strandat 504.842 kb on - strandat 504.862 kb on + strandat 504.911 kb on + strand, within Shew_0454at 505.019 kb on - strand, within Shew_0454at 505.324 kb on + strand, within Shew_0454

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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502,430 + +0.2
502,568 + Shew_0452 0.14 +0.1
502,916 + Shew_0452 0.50 -0.1
502,934 + Shew_0452 0.52 -0.6
503,335 + +0.3
503,342 + +0.0
503,343 - +0.1
503,402 + -0.7
503,421 - +0.3
503,430 + -0.8
503,719 + Shew_0453 0.31 +0.4
503,761 - Shew_0453 0.35 +0.1
504,038 + Shew_0453 0.63 +3.1
504,055 + Shew_0453 0.64 -0.0
504,839 + +0.2
504,842 - +0.4
504,862 + +1.1
504,911 + Shew_0454 0.12 -0.2
505,019 - Shew_0454 0.25 -0.2
505,324 + Shew_0454 0.63 -0.2

Or see this region's nucleotide sequence