Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4015 and Dshi_4016 are separated by 156 nucleotides Dshi_4016 and Dshi_4017 are separated by 87 nucleotides Dshi_4017 and Dshi_4018 are separated by 23 nucleotides Dshi_4018 and Dshi_4019 are separated by 40 nucleotides Dshi_4019 and Dshi_4020 are separated by 278 nucleotides
Dshi_4015: Dshi_4015 - parB-like partition protein (RefSeq), at 81,749 to 83,731
_4015
Dshi_4016: Dshi_4016 - hypothetical protein (RefSeq), at 83,888 to 84,277
_4016
Dshi_4017: Dshi_4017 - hypothetical protein (RefSeq), at 84,365 to 84,574
_4017
Dshi_4018: Dshi_4018 - domain of unknown function DUF1738 (RefSeq), at 84,598 to 85,536
_4018
Dshi_4019: Dshi_4019 - hypothetical protein (RefSeq), at 85,577 to 86,062
_4019
Dshi_4020: Dshi_4020 - filamentation induced by cAMP protein Fic (RefSeq), at 86,341 to 87,543
_4020
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1 at 83.607 kb on - strand at 83.668 kb on + strand at 83.668 kb on + strand at 83.671 kb on - strand at 83.706 kb on + strand at 83.739 kb on + strand at 83.810 kb on + strand at 83.880 kb on + strand at 83.884 kb on + strand at 83.888 kb on - strand at 84.020 kb on + strand, within Dshi_4016 at 84.028 kb on - strand, within Dshi_4016 at 84.158 kb on + strand, within Dshi_4016 at 84.210 kb on - strand, within Dshi_4016 at 84.238 kb on + strand, within Dshi_4016 at 84.246 kb on - strand at 84.246 kb on - strand at 84.246 kb on - strand at 84.260 kb on - strand at 84.265 kb on - strand at 84.294 kb on - strand at 84.376 kb on + strand at 84.377 kb on + strand at 84.422 kb on + strand, within Dshi_4017 at 84.425 kb on - strand, within Dshi_4017 at 84.427 kb on + strand, within Dshi_4017 at 84.430 kb on - strand, within Dshi_4017 at 84.911 kb on + strand, within Dshi_4018 at 84.918 kb on + strand, within Dshi_4018 at 84.946 kb on - strand, within Dshi_4018 at 84.948 kb on + strand, within Dshi_4018 at 84.968 kb on + strand, within Dshi_4018 at 84.988 kb on + strand, within Dshi_4018 at 85.062 kb on + strand, within Dshi_4018 at 85.088 kb on + strand, within Dshi_4018 at 85.136 kb on + strand, within Dshi_4018 at 85.146 kb on + strand, within Dshi_4018 at 85.260 kb on - strand, within Dshi_4018 at 85.312 kb on - strand, within Dshi_4018 at 85.352 kb on - strand, within Dshi_4018 at 85.392 kb on - strand, within Dshi_4018 at 85.531 kb on + strand at 85.568 kb on + strand at 85.686 kb on + strand, within Dshi_4019 at 85.713 kb on - strand, within Dshi_4019 at 85.742 kb on + strand, within Dshi_4019 at 85.792 kb on - strand, within Dshi_4019 at 85.816 kb on + strand, within Dshi_4019 at 85.916 kb on + strand, within Dshi_4019 at 85.959 kb on + strand, within Dshi_4019 at 85.982 kb on - strand, within Dshi_4019 at 85.985 kb on + strand, within Dshi_4019 at 85.996 kb on + strand, within Dshi_4019 at 86.021 kb on + strand at 86.049 kb on + strand at 86.071 kb on + strand at 86.094 kb on - strand at 86.103 kb on - strand at 86.122 kb on - strand at 86.166 kb on + strand at 86.166 kb on + strand at 86.166 kb on + strand at 86.370 kb on + strand at 86.453 kb on + strand at 86.485 kb on + strand, within Dshi_4020 at 86.521 kb on - strand, within Dshi_4020 at 86.521 kb on - strand, within Dshi_4020
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 83,607 - +0.6 83,668 + -1.1 83,668 + +0.3 83,671 - -0.4 83,706 + +0.0 83,739 + -0.1 83,810 + -0.2 83,880 + +0.4 83,884 + +0.7 83,888 - -0.6 84,020 + Dshi_4016 0.34 -0.0 84,028 - Dshi_4016 0.36 +0.8 84,158 + Dshi_4016 0.69 -1.0 84,210 - Dshi_4016 0.83 +0.2 84,238 + Dshi_4016 0.90 +1.2 84,246 - -0.1 84,246 - +0.7 84,246 - -0.6 84,260 - +0.2 84,265 - -0.7 84,294 - -0.3 84,376 + +0.1 84,377 + -0.3 84,422 + Dshi_4017 0.27 +0.8 84,425 - Dshi_4017 0.29 +0.3 84,427 + Dshi_4017 0.30 +0.0 84,430 - Dshi_4017 0.31 -0.4 84,911 + Dshi_4018 0.33 -0.6 84,918 + Dshi_4018 0.34 -0.7 84,946 - Dshi_4018 0.37 -0.8 84,948 + Dshi_4018 0.37 -1.4 84,968 + Dshi_4018 0.39 -0.7 84,988 + Dshi_4018 0.42 -0.2 85,062 + Dshi_4018 0.49 +0.4 85,088 + Dshi_4018 0.52 -0.6 85,136 + Dshi_4018 0.57 -0.4 85,146 + Dshi_4018 0.58 -0.5 85,260 - Dshi_4018 0.71 -0.4 85,312 - Dshi_4018 0.76 -0.7 85,352 - Dshi_4018 0.80 -0.1 85,392 - Dshi_4018 0.85 -0.2 85,531 + -0.9 85,568 + +0.6 85,686 + Dshi_4019 0.22 -0.5 85,713 - Dshi_4019 0.28 -0.2 85,742 + Dshi_4019 0.34 +0.2 85,792 - Dshi_4019 0.44 +0.2 85,816 + Dshi_4019 0.49 -0.1 85,916 + Dshi_4019 0.70 -1.0 85,959 + Dshi_4019 0.79 -0.9 85,982 - Dshi_4019 0.83 -0.3 85,985 + Dshi_4019 0.84 -0.6 85,996 + Dshi_4019 0.86 +0.0 86,021 + +0.4 86,049 + +0.4 86,071 + +0.8 86,094 - +0.3 86,103 - +0.9 86,122 - +0.4 86,166 + +0.4 86,166 + -0.1 86,166 + +0.1 86,370 + -0.7 86,453 + +0.5 86,485 + Dshi_4020 0.12 +0.7 86,521 - Dshi_4020 0.15 -0.2 86,521 - Dshi_4020 0.15 +0.3
Or see this region's nucleotide sequence