Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0752

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0751 and Dshi_0752 are separated by 42 nucleotidesDshi_0752 and Dshi_0753 overlap by 13 nucleotidesDshi_0753 and Dshi_0754 are separated by 9 nucleotides Dshi_0751: Dshi_0751 - protein of unknown function DUF344 (RefSeq), at 761,970 to 762,914 _0751 Dshi_0752: Dshi_0752 - protein of unknown function DUF1007 (RefSeq), at 762,957 to 763,637 _0752 Dshi_0753: Dshi_0753 - high-affinity nickel-transporter (RefSeq), at 763,625 to 764,581 _0753 Dshi_0754: Dshi_0754 - Methyltransferase type 11 (RefSeq), at 764,591 to 765,187 _0754 Position (kb) 762 763 764Strain fitness (log2 ratio) -2 -1 0 1at 761.962 kb on - strandat 761.967 kb on + strandat 762.032 kb on - strandat 762.183 kb on - strand, within Dshi_0751at 762.185 kb on - strand, within Dshi_0751at 762.187 kb on + strand, within Dshi_0751at 762.251 kb on - strand, within Dshi_0751at 762.311 kb on + strand, within Dshi_0751at 762.319 kb on - strand, within Dshi_0751at 762.374 kb on - strand, within Dshi_0751at 762.402 kb on - strand, within Dshi_0751at 762.423 kb on + strand, within Dshi_0751at 762.434 kb on + strand, within Dshi_0751at 762.442 kb on - strand, within Dshi_0751at 762.554 kb on + strand, within Dshi_0751at 762.572 kb on + strand, within Dshi_0751at 762.662 kb on + strand, within Dshi_0751at 762.664 kb on - strand, within Dshi_0751at 762.713 kb on - strand, within Dshi_0751at 762.803 kb on - strand, within Dshi_0751at 762.846 kb on - strandat 762.864 kb on + strandat 762.880 kb on - strandat 762.984 kb on + strandat 762.986 kb on + strandat 762.986 kb on + strandat 763.094 kb on + strand, within Dshi_0752at 763.170 kb on - strand, within Dshi_0752at 763.219 kb on - strand, within Dshi_0752at 763.342 kb on + strand, within Dshi_0752at 763.381 kb on + strand, within Dshi_0752at 763.606 kb on + strandat 764.018 kb on + strand, within Dshi_0753at 764.130 kb on - strand, within Dshi_0753at 764.187 kb on + strand, within Dshi_0753at 764.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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761,962 - +0.7
761,967 + -0.2
762,032 - +0.1
762,183 - Dshi_0751 0.23 -0.6
762,185 - Dshi_0751 0.23 -0.1
762,187 + Dshi_0751 0.23 -0.2
762,251 - Dshi_0751 0.30 +0.4
762,311 + Dshi_0751 0.36 -0.1
762,319 - Dshi_0751 0.37 +0.3
762,374 - Dshi_0751 0.43 +0.6
762,402 - Dshi_0751 0.46 +0.7
762,423 + Dshi_0751 0.48 -0.3
762,434 + Dshi_0751 0.49 -0.4
762,442 - Dshi_0751 0.50 -0.7
762,554 + Dshi_0751 0.62 +0.1
762,572 + Dshi_0751 0.64 -0.5
762,662 + Dshi_0751 0.73 -0.7
762,664 - Dshi_0751 0.73 +0.4
762,713 - Dshi_0751 0.79 +0.1
762,803 - Dshi_0751 0.88 +0.9
762,846 - +1.2
762,864 + -0.5
762,880 - +0.3
762,984 + +0.1
762,986 + -0.6
762,986 + -0.1
763,094 + Dshi_0752 0.20 -0.3
763,170 - Dshi_0752 0.31 -1.8
763,219 - Dshi_0752 0.38 -1.5
763,342 + Dshi_0752 0.57 -0.5
763,381 + Dshi_0752 0.62 -1.3
763,606 + +0.1
764,018 + Dshi_0753 0.41 -0.9
764,130 - Dshi_0753 0.53 +0.4
764,187 + Dshi_0753 0.59 -0.3
764,637 + +0.1

Or see this region's nucleotide sequence