Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3036

Experiment: Bile salts 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bile salts 0.25 mg/ml
3,843,148	+		BT3035	0.44	-2.9
3,843,302	-		BT3035	0.54	-0.3
3,843,357	+		BT3035	0.57	-4.3
3,843,365	+		BT3035	0.58	-1.7
3,843,451	+		BT3035	0.63	-2.1
3,843,452	-		BT3035	0.63	-2.6
3,843,455	-		BT3035	0.63	-2.9
3,843,506	-		BT3035	0.66	-0.7
3,843,510	+		BT3035	0.67	-5.5
3,843,521	+		BT3035	0.67	-1.9
3,843,522	-		BT3035	0.67	-3.5
3,843,522	-		BT3035	0.67	-2.4
3,843,660	+		BT3035	0.76	-1.0
3,843,670	+		BT3035	0.77	-1.7
3,843,762	+		BT3035	0.83	-3.2
3,843,766	+		BT3035	0.83	-1.9
3,843,766	+		BT3035	0.83	-2.6
3,843,967	-				-2.5
3,843,967	-				-2.1
3,844,089	+				-1.4
3,844,090	-				+0.6
3,844,090	-				+0.7
3,844,093	-				-0.3
3,844,099	-				+0.6
3,844,118	+				-0.3
3,844,118	+				-0.8
3,844,124	-				-3.0
3,844,124	-				-1.9
3,844,425	+		BT3036	0.12	-1.1
3,844,480	+		BT3036	0.14	-0.3
3,844,481	-		BT3036	0.14	-0.1
3,844,482	+		BT3036	0.14	-0.2
3,844,629	+		BT3036	0.20	-2.1
3,844,630	-		BT3036	0.20	+0.3
3,844,633	+		BT3036	0.20	+0.1
3,844,633	+		BT3036	0.20	-0.6
3,844,634	-		BT3036	0.20	-0.3
3,844,714	+		BT3036	0.23	-1.7
3,844,714	+		BT3036	0.23	-1.0
3,844,715	-		BT3036	0.23	+0.3
3,844,742	-		BT3036	0.24	-2.8
3,844,775	-		BT3036	0.25	-1.2
3,844,892	-		BT3036	0.30	+2.3
3,844,952	-		BT3036	0.32	+0.3
3,844,952	-		BT3036	0.32	-1.3
3,845,110	+				+1.3
3,845,121	+		BT3036	0.39	-0.0
3,845,121	+		BT3036	0.39	+0.8
3,845,121	+		BT3036	0.39	-0.8
3,845,121	+		BT3036	0.39	-0.7
3,845,208	+		BT3036	0.42	+0.7
3,845,208	+		BT3036	0.42	-0.1
3,845,322	-		BT3036	0.47	-0.3
3,845,328	+		BT3036	0.47	-1.0
3,845,328	+		BT3036	0.47	+0.1
3,845,328	+		BT3036	0.47	-0.3
3,845,329	-		BT3036	0.47	-1.1
3,845,329	-		BT3036	0.47	-1.7
3,845,330	+		BT3036	0.47	-0.7
3,845,331	-		BT3036	0.47	+1.3
3,845,360	+		BT3036	0.48	-0.8
3,845,360	+		BT3036	0.48	-0.6
3,845,361	-		BT3036	0.48	-0.5
3,845,361	-		BT3036	0.48	-0.0
3,845,361	-		BT3036	0.48	-0.7
3,845,363	+		BT3036	0.48	-0.5
3,845,364	-		BT3036	0.48	-2.8
3,845,476	-		BT3036	0.53	-2.0
3,845,520	+		BT3036	0.54	-0.0
3,845,527	-		BT3036	0.55	+0.9
3,845,611	-		BT3036	0.58	-1.0
3,845,611	-		BT3036	0.58	-0.4
3,845,698	+		BT3036	0.61	-1.3
3,845,699	-		BT3036	0.61	-1.5
3,845,914	-		BT3036	0.69	-0.2
3,845,962	-		BT3036	0.71	-2.3
3,845,974	-		BT3036	0.72	+0.3
3,846,000	+		BT3036	0.73	-0.1
3,846,001	-		BT3036	0.73	-1.2
3,846,013	-		BT3036	0.73	+0.6
3,846,052	+		BT3036	0.75	-1.2
3,846,109	-		BT3036	0.77	-1.1
3,846,109	-		BT3036	0.77	-0.7
3,846,125	+		BT3036	0.78	-0.9
3,846,129	+		BT3036	0.78	+0.9
3,846,129	+		BT3036	0.78	-1.6
3,846,129	+		BT3036	0.78	-0.4
3,846,130	-		BT3036	0.78	-1.4
3,846,130	-		BT3036	0.78	+0.3
3,846,175	+		BT3036	0.80	-1.7
3,846,175	+		BT3036	0.80	-1.9
3,846,253	+		BT3036	0.83	-0.3
3,846,254	-		BT3036	0.83	-1.3
3,846,311	-		BT3036	0.85	-0.3
3,846,311	-		BT3036	0.85	-0.5
3,846,311	-		BT3036	0.85	-1.3
3,846,433	-		BT3036	0.90	-1.5
3,846,549	+				-0.7
3,846,561	+				-0.2
3,846,657	+				-1.9
3,846,658	-				-0.6
3,846,659	+				+0.7
3,846,758	-				-0.7
3,846,768	+				-2.8
3,846,768	+				-1.3
3,846,769	-				-1.7
3,846,769	-				-2.0
3,846,771	+				-1.6
3,846,772	-				-0.9
3,846,823	-				+0.5
3,846,878	+				-3.3
3,846,904	-				-1.7
3,846,991	-		BT3037	0.16	-0.7
3,847,107	+		BT3037	0.39	+0.5
3,847,110	-		BT3037	0.39	+0.1
3,847,182	+		BT3037	0.54	-0.3
3,847,183	-		BT3037	0.54	+0.7
3,847,211	+		BT3037	0.59	-1.9
3,847,298	-		BT3037	0.76	-0.5
3,847,302	+		BT3037	0.77	-1.1
3,847,302	+		BT3037	0.77	-0.9
3,847,376	-				-1.1
3,847,391	+				-1.8
3,847,392	-				-0.8
3,847,430	-				-1.8
3,847,534	-				+1.3