Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08375 and MMP_RS08380 are separated by 2 nucleotides MMP_RS08380 and MMP_RS08385 are separated by 163 nucleotides
MMP_RS08375: MMP_RS08375 - ATP-binding cassette domain-containing protein, at 1,572,746 to 1,574,395
_RS08375
MMP_RS08380: MMP_RS08380 - phosphatase PAP2 family protein, at 1,574,398 to 1,574,946
_RS08380
MMP_RS08385: MMP_RS08385 - ABC transporter substrate-binding protein, at 1,575,110 to 1,575,832
_RS08385
Position (kb)
1574
1575 Strain fitness (log2 ratio)
-1
0
1 at 1573.472 kb on - strand at 1573.694 kb on + strand at 1573.762 kb on - strand at 1574.399 kb on - strand at 1574.425 kb on + strand at 1574.434 kb on + strand at 1574.509 kb on + strand, within MMP_RS08380 at 1574.569 kb on - strand, within MMP_RS08380 at 1574.724 kb on + strand, within MMP_RS08380 at 1574.749 kb on - strand, within MMP_RS08380 at 1574.835 kb on + strand, within MMP_RS08380 at 1574.836 kb on - strand, within MMP_RS08380 at 1575.011 kb on + strand at 1575.037 kb on + strand at 1575.056 kb on - strand at 1575.163 kb on - strand at 1575.223 kb on - strand, within MMP_RS08385 at 1575.272 kb on - strand, within MMP_RS08385 at 1575.326 kb on - strand, within MMP_RS08385 at 1575.405 kb on - strand, within MMP_RS08385 at 1575.556 kb on - strand, within MMP_RS08385 at 1575.556 kb on - strand, within MMP_RS08385 at 1575.604 kb on - strand, within MMP_RS08385 at 1575.622 kb on + strand, within MMP_RS08385 at 1575.752 kb on + strand, within MMP_RS08385 at 1575.919 kb on - strand at 1575.919 kb on - strand at 1575.931 kb on - strand at 1575.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 1,573,472 - -0.3 1,573,694 + -0.9 1,573,762 - +0.0 1,574,399 - -0.4 1,574,425 + -0.7 1,574,434 + -0.4 1,574,509 + MMP_RS08380 0.20 -0.2 1,574,569 - MMP_RS08380 0.31 -0.3 1,574,724 + MMP_RS08380 0.59 -0.1 1,574,749 - MMP_RS08380 0.64 +0.2 1,574,835 + MMP_RS08380 0.80 -0.6 1,574,836 - MMP_RS08380 0.80 -0.5 1,575,011 + -0.5 1,575,037 + -0.5 1,575,056 - +0.4 1,575,163 - -0.3 1,575,223 - MMP_RS08385 0.16 -0.0 1,575,272 - MMP_RS08385 0.22 -0.5 1,575,326 - MMP_RS08385 0.30 +0.1 1,575,405 - MMP_RS08385 0.41 -0.1 1,575,556 - MMP_RS08385 0.62 +0.2 1,575,556 - MMP_RS08385 0.62 +0.1 1,575,604 - MMP_RS08385 0.68 -0.3 1,575,622 + MMP_RS08385 0.71 +0.2 1,575,752 + MMP_RS08385 0.89 +1.1 1,575,919 - +0.3 1,575,919 - +0.0 1,575,931 - -0.4 1,575,931 - -0.8
Or see this region's nucleotide sequence