Experiment: Formate with EDTA 3.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04180 and MMP_RS04185 are separated by 11 nucleotides MMP_RS04185 and MMP_RS04190 are separated by 87 nucleotides MMP_RS04190 and MMP_RS04195 are separated by 217 nucleotides
MMP_RS04180: MMP_RS04180 - iron-containing alcohol dehydrogenase, at 794,946 to 796,115
_RS04180
MMP_RS04185: MMP_RS04185 - aldo/keto reductase, at 796,127 to 797,239
_RS04185
MMP_RS04190: MMP_RS04190 - hypothetical protein, at 797,327 to 797,842
_RS04190
MMP_RS04195: MMP_RS04195 - flavodoxin, at 798,060 to 798,596
_RS04195
Position (kb) 796
797
798 Strain fitness (log2 ratio) -1
0
1
2 at 795.133 kb on - strand, within MMP_RS04180 at 795.134 kb on + strand, within MMP_RS04180 at 795.371 kb on - strand, within MMP_RS04180 at 795.372 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.565 kb on + strand, within MMP_RS04180 at 795.568 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.600 kb on - strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.601 kb on + strand, within MMP_RS04180 at 795.850 kb on - strand, within MMP_RS04180 at 795.851 kb on + strand, within MMP_RS04180 at 795.883 kb on - strand, within MMP_RS04180 at 795.940 kb on - strand, within MMP_RS04180 at 795.968 kb on - strand, within MMP_RS04180 at 795.969 kb on + strand, within MMP_RS04180 at 795.982 kb on + strand, within MMP_RS04180 at 795.989 kb on - strand, within MMP_RS04180 at 796.050 kb on + strand at 796.069 kb on - strand at 796.070 kb on + strand at 796.108 kb on + strand at 796.169 kb on + strand at 796.236 kb on + strand at 796.278 kb on + strand, within MMP_RS04185 at 796.304 kb on + strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.333 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.347 kb on - strand, within MMP_RS04185 at 796.445 kb on + strand, within MMP_RS04185 at 796.448 kb on + strand, within MMP_RS04185 at 796.600 kb on - strand, within MMP_RS04185 at 796.635 kb on - strand, within MMP_RS04185 at 796.861 kb on + strand, within MMP_RS04185 at 796.881 kb on - strand, within MMP_RS04185 at 796.916 kb on - strand, within MMP_RS04185 at 796.919 kb on - strand, within MMP_RS04185 at 797.002 kb on - strand, within MMP_RS04185 at 797.047 kb on + strand, within MMP_RS04185 at 797.055 kb on + strand, within MMP_RS04185 at 797.099 kb on - strand, within MMP_RS04185 at 797.100 kb on + strand, within MMP_RS04185 at 797.172 kb on - strand at 797.273 kb on - strand at 797.305 kb on + strand at 797.361 kb on - strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.362 kb on + strand at 797.365 kb on + strand at 797.403 kb on + strand, within MMP_RS04190 at 797.536 kb on + strand, within MMP_RS04190 at 797.597 kb on + strand, within MMP_RS04190 at 797.709 kb on + strand, within MMP_RS04190 at 797.723 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.728 kb on - strand, within MMP_RS04190 at 797.810 kb on + strand at 797.810 kb on + strand at 797.818 kb on - strand at 797.821 kb on + strand at 797.821 kb on + strand at 797.859 kb on - strand at 797.959 kb on + strand at 797.959 kb on + strand at 798.002 kb on + strand at 798.090 kb on + strand at 798.090 kb on + strand at 798.179 kb on + strand, within MMP_RS04195
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM remove 795,133 - MMP_RS04180 0.16 -0.2 795,134 + MMP_RS04180 0.16 +0.4 795,371 - MMP_RS04180 0.36 -0.6 795,372 + MMP_RS04180 0.36 +0.1 795,565 + MMP_RS04180 0.53 -0.3 795,565 + MMP_RS04180 0.53 +0.4 795,568 - MMP_RS04180 0.53 +0.2 795,600 - MMP_RS04180 0.56 -0.3 795,600 - MMP_RS04180 0.56 -0.5 795,600 - MMP_RS04180 0.56 +0.1 795,601 + MMP_RS04180 0.56 -0.3 795,601 + MMP_RS04180 0.56 +0.2 795,850 - MMP_RS04180 0.77 +0.4 795,851 + MMP_RS04180 0.77 -0.5 795,883 - MMP_RS04180 0.80 +0.2 795,940 - MMP_RS04180 0.85 +0.6 795,968 - MMP_RS04180 0.87 -0.4 795,969 + MMP_RS04180 0.87 -0.3 795,982 + MMP_RS04180 0.89 +0.9 795,989 - MMP_RS04180 0.89 -0.2 796,050 + +0.0 796,069 - -0.6 796,070 + +2.0 796,108 + -0.4 796,169 + +0.2 796,236 + -0.1 796,278 + MMP_RS04185 0.14 -0.3 796,304 + MMP_RS04185 0.16 -0.6 796,333 - MMP_RS04185 0.19 +0.2 796,333 - MMP_RS04185 0.19 -0.5 796,347 - MMP_RS04185 0.20 -0.0 796,347 - MMP_RS04185 0.20 +0.4 796,445 + MMP_RS04185 0.29 -0.5 796,448 + MMP_RS04185 0.29 -0.1 796,600 - MMP_RS04185 0.42 -0.2 796,635 - MMP_RS04185 0.46 -0.6 796,861 + MMP_RS04185 0.66 +0.1 796,881 - MMP_RS04185 0.68 -0.1 796,916 - MMP_RS04185 0.71 -0.3 796,919 - MMP_RS04185 0.71 -0.0 797,002 - MMP_RS04185 0.79 -0.7 797,047 + MMP_RS04185 0.83 -0.4 797,055 + MMP_RS04185 0.83 +0.1 797,099 - MMP_RS04185 0.87 -1.1 797,100 + MMP_RS04185 0.87 +0.1 797,172 - -0.4 797,273 - -0.4 797,305 + -0.2 797,361 - +0.0 797,362 + -0.8 797,362 + -0.4 797,362 + +0.0 797,365 + -0.3 797,403 + MMP_RS04190 0.15 -0.2 797,536 + MMP_RS04190 0.41 +0.3 797,597 + MMP_RS04190 0.52 -0.6 797,709 + MMP_RS04190 0.74 -0.7 797,723 - MMP_RS04190 0.77 +0.4 797,728 - MMP_RS04190 0.78 +0.2 797,728 - MMP_RS04190 0.78 +0.7 797,810 + -0.5 797,810 + +0.3 797,818 - +0.8 797,821 + +0.4 797,821 + +0.3 797,859 - +0.0 797,959 + +0.1 797,959 + +0.1 798,002 + -0.3 798,090 + +0.3 798,090 + +1.2 798,179 + MMP_RS04195 0.22 +0.2
Or see this region's nucleotide sequence