Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04135

Experiment: Formate with EDTA 3.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04130 and MMP_RS04135 are separated by 15 nucleotidesMMP_RS04135 and MMP_RS04140 are separated by 168 nucleotidesMMP_RS04140 and MMP_RS04145 are separated by 123 nucleotides MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689 _RS04130 MMP_RS04135: MMP_RS04135 - DUF3737 family protein, at 785,705 to 786,652 _RS04135 MMP_RS04140: MMP_RS04140 - phospholipid methyltransferase, at 786,821 to 787,339 _RS04140 MMP_RS04145: MMP_RS04145 - hypothetical protein, at 787,463 to 787,987 _RS04145 Position (kb) 785 786 787Strain fitness (log2 ratio) -1 0 1 2at 784.765 kb on + strandat 784.823 kb on - strand, within MMP_RS04130at 784.823 kb on - strand, within MMP_RS04130at 784.823 kb on - strand, within MMP_RS04130at 784.824 kb on + strand, within MMP_RS04130at 784.824 kb on + strand, within MMP_RS04130at 784.824 kb on + strand, within MMP_RS04130at 784.844 kb on + strand, within MMP_RS04130at 784.873 kb on + strand, within MMP_RS04130at 784.914 kb on - strand, within MMP_RS04130at 784.914 kb on - strand, within MMP_RS04130at 784.970 kb on - strand, within MMP_RS04130at 785.020 kb on + strand, within MMP_RS04130at 785.020 kb on + strand, within MMP_RS04130at 785.073 kb on - strand, within MMP_RS04130at 785.074 kb on + strand, within MMP_RS04130at 785.176 kb on - strand, within MMP_RS04130at 785.176 kb on - strand, within MMP_RS04130at 785.176 kb on - strand, within MMP_RS04130at 785.176 kb on - strand, within MMP_RS04130at 785.176 kb on - strand, within MMP_RS04130at 785.177 kb on + strand, within MMP_RS04130at 785.177 kb on + strand, within MMP_RS04130at 785.177 kb on + strand, within MMP_RS04130at 785.177 kb on + strand, within MMP_RS04130at 785.177 kb on + strand, within MMP_RS04130at 785.181 kb on + strand, within MMP_RS04130at 785.185 kb on - strand, within MMP_RS04130at 785.185 kb on - strand, within MMP_RS04130at 785.186 kb on + strand, within MMP_RS04130at 785.186 kb on + strand, within MMP_RS04130at 785.186 kb on + strand, within MMP_RS04130at 785.187 kb on - strand, within MMP_RS04130at 785.187 kb on - strand, within MMP_RS04130at 785.188 kb on + strand, within MMP_RS04130at 785.188 kb on + strand, within MMP_RS04130at 785.188 kb on + strand, within MMP_RS04130at 785.239 kb on - strand, within MMP_RS04130at 785.250 kb on - strand, within MMP_RS04130at 785.301 kb on - strand, within MMP_RS04130at 785.352 kb on - strand, within MMP_RS04130at 785.353 kb on + strand, within MMP_RS04130at 785.385 kb on + strand, within MMP_RS04130at 785.409 kb on - strand, within MMP_RS04130at 785.474 kb on - strand, within MMP_RS04130at 785.474 kb on - strand, within MMP_RS04130at 785.474 kb on - strand, within MMP_RS04130at 785.475 kb on + strand, within MMP_RS04130at 785.475 kb on + strand, within MMP_RS04130at 785.512 kb on + strand, within MMP_RS04130at 785.537 kb on - strand, within MMP_RS04130at 785.555 kb on - strand, within MMP_RS04130at 785.585 kb on - strand, within MMP_RS04130at 785.585 kb on - strand, within MMP_RS04130at 785.609 kb on + strandat 785.609 kb on + strandat 785.658 kb on - strandat 785.688 kb on + strandat 785.698 kb on + strandat 785.700 kb on - strandat 785.700 kb on - strandat 785.701 kb on + strandat 785.731 kb on + strandat 785.734 kb on - strandat 785.811 kb on - strand, within MMP_RS04135at 785.812 kb on + strand, within MMP_RS04135at 785.814 kb on + strand, within MMP_RS04135at 785.824 kb on + strand, within MMP_RS04135at 785.934 kb on - strand, within MMP_RS04135at 785.936 kb on - strand, within MMP_RS04135at 786.041 kb on - strand, within MMP_RS04135at 786.044 kb on + strand, within MMP_RS04135at 786.064 kb on + strand, within MMP_RS04135at 786.083 kb on + strand, within MMP_RS04135at 786.086 kb on + strand, within MMP_RS04135at 786.094 kb on + strand, within MMP_RS04135at 786.116 kb on + strand, within MMP_RS04135at 786.128 kb on + strand, within MMP_RS04135at 786.128 kb on + strand, within MMP_RS04135at 786.131 kb on + strand, within MMP_RS04135at 786.355 kb on - strand, within MMP_RS04135at 786.355 kb on - strand, within MMP_RS04135at 786.356 kb on + strand, within MMP_RS04135at 786.383 kb on - strand, within MMP_RS04135at 786.532 kb on - strand, within MMP_RS04135at 786.533 kb on + strand, within MMP_RS04135at 786.701 kb on - strandat 786.730 kb on - strandat 786.747 kb on - strandat 786.773 kb on - strandat 786.774 kb on + strandat 786.790 kb on - strandat 786.791 kb on + strandat 786.852 kb on - strandat 786.856 kb on - strandat 786.860 kb on + strandat 786.873 kb on - strand, within MMP_RS04140at 786.878 kb on + strand, within MMP_RS04140at 786.898 kb on - strand, within MMP_RS04140at 786.970 kb on - strand, within MMP_RS04140at 786.970 kb on - strand, within MMP_RS04140at 786.977 kb on + strand, within MMP_RS04140at 786.985 kb on + strand, within MMP_RS04140at 786.985 kb on + strand, within MMP_RS04140at 786.986 kb on - strand, within MMP_RS04140at 786.986 kb on - strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 786.987 kb on + strand, within MMP_RS04140at 787.028 kb on - strand, within MMP_RS04140at 787.038 kb on - strand, within MMP_RS04140at 787.039 kb on + strand, within MMP_RS04140at 787.042 kb on + strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.046 kb on - strand, within MMP_RS04140at 787.048 kb on - strand, within MMP_RS04140at 787.048 kb on - strand, within MMP_RS04140at 787.049 kb on + strand, within MMP_RS04140at 787.065 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.078 kb on - strand, within MMP_RS04140at 787.079 kb on + strand, within MMP_RS04140at 787.079 kb on + strand, within MMP_RS04140at 787.083 kb on - strand, within MMP_RS04140at 787.088 kb on - strand, within MMP_RS04140at 787.088 kb on - strand, within MMP_RS04140at 787.094 kb on + strand, within MMP_RS04140at 787.099 kb on - strand, within MMP_RS04140at 787.129 kb on + strand, within MMP_RS04140at 787.131 kb on + strand, within MMP_RS04140at 787.164 kb on + strand, within MMP_RS04140at 787.180 kb on + strand, within MMP_RS04140at 787.180 kb on + strand, within MMP_RS04140at 787.228 kb on + strand, within MMP_RS04140at 787.256 kb on + strand, within MMP_RS04140at 787.301 kb on - strandat 787.301 kb on - strandat 787.310 kb on - strandat 787.311 kb on + strandat 787.312 kb on - strandat 787.319 kb on + strandat 787.323 kb on - strandat 787.333 kb on - strandat 787.344 kb on - strandat 787.347 kb on + strandat 787.350 kb on + strandat 787.387 kb on - strandat 787.387 kb on - strandat 787.440 kb on - strandat 787.446 kb on + strandat 787.648 kb on + strand, within MMP_RS04145

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with EDTA 3.9 mM
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784,765 + -0.0
784,823 - MMP_RS04130 0.12 -0.3
784,823 - MMP_RS04130 0.12 +0.1
784,823 - MMP_RS04130 0.12 +0.7
784,824 + MMP_RS04130 0.12 +0.1
784,824 + MMP_RS04130 0.12 +0.0
784,824 + MMP_RS04130 0.12 +0.1
784,844 + MMP_RS04130 0.14 -0.2
784,873 + MMP_RS04130 0.17 -0.4
784,914 - MMP_RS04130 0.21 -0.2
784,914 - MMP_RS04130 0.21 -0.9
784,970 - MMP_RS04130 0.27 +0.1
785,020 + MMP_RS04130 0.32 -0.0
785,020 + MMP_RS04130 0.32 -0.1
785,073 - MMP_RS04130 0.37 -0.2
785,074 + MMP_RS04130 0.38 +0.1
785,176 - MMP_RS04130 0.48 +1.3
785,176 - MMP_RS04130 0.48 -0.9
785,176 - MMP_RS04130 0.48 -0.3
785,176 - MMP_RS04130 0.48 -0.1
785,176 - MMP_RS04130 0.48 +1.1
785,177 + MMP_RS04130 0.48 -0.3
785,177 + MMP_RS04130 0.48 -1.2
785,177 + MMP_RS04130 0.48 +1.1
785,177 + MMP_RS04130 0.48 -0.2
785,177 + MMP_RS04130 0.48 +0.1
785,181 + MMP_RS04130 0.48 +0.1
785,185 - MMP_RS04130 0.49 -0.3
785,185 - MMP_RS04130 0.49 -0.7
785,186 + MMP_RS04130 0.49 -0.1
785,186 + MMP_RS04130 0.49 -0.0
785,186 + MMP_RS04130 0.49 +0.1
785,187 - MMP_RS04130 0.49 -0.4
785,187 - MMP_RS04130 0.49 -0.6
785,188 + MMP_RS04130 0.49 -0.2
785,188 + MMP_RS04130 0.49 +0.3
785,188 + MMP_RS04130 0.49 +1.0
785,239 - MMP_RS04130 0.54 +0.7
785,250 - MMP_RS04130 0.55 -0.1
785,301 - MMP_RS04130 0.61 +0.5
785,352 - MMP_RS04130 0.66 -0.2
785,353 + MMP_RS04130 0.66 -0.7
785,385 + MMP_RS04130 0.69 -0.3
785,409 - MMP_RS04130 0.72 +0.5
785,474 - MMP_RS04130 0.78 -0.1
785,474 - MMP_RS04130 0.78 -0.4
785,474 - MMP_RS04130 0.78 -0.3
785,475 + MMP_RS04130 0.78 +0.1
785,475 + MMP_RS04130 0.78 -0.0
785,512 + MMP_RS04130 0.82 -0.2
785,537 - MMP_RS04130 0.84 -0.4
785,555 - MMP_RS04130 0.86 +0.1
785,585 - MMP_RS04130 0.89 -0.4
785,585 - MMP_RS04130 0.89 -0.5
785,609 + -0.1
785,609 + -0.1
785,658 - +0.3
785,688 + -0.1
785,698 + +0.1
785,700 - -0.2
785,700 - +0.9
785,701 + -0.4
785,731 + +0.5
785,734 - -0.0
785,811 - MMP_RS04135 0.11 +0.2
785,812 + MMP_RS04135 0.11 -0.1
785,814 + MMP_RS04135 0.11 +0.6
785,824 + MMP_RS04135 0.13 +0.2
785,934 - MMP_RS04135 0.24 -0.5
785,936 - MMP_RS04135 0.24 -0.9
786,041 - MMP_RS04135 0.35 -0.3
786,044 + MMP_RS04135 0.36 +0.1
786,064 + MMP_RS04135 0.38 -0.3
786,083 + MMP_RS04135 0.40 -0.6
786,086 + MMP_RS04135 0.40 -0.6
786,094 + MMP_RS04135 0.41 -0.1
786,116 + MMP_RS04135 0.43 -0.5
786,128 + MMP_RS04135 0.45 -0.4
786,128 + MMP_RS04135 0.45 -0.1
786,131 + MMP_RS04135 0.45 -0.3
786,355 - MMP_RS04135 0.69 -0.5
786,355 - MMP_RS04135 0.69 -0.1
786,356 + MMP_RS04135 0.69 -0.4
786,383 - MMP_RS04135 0.72 +0.1
786,532 - MMP_RS04135 0.87 -0.5
786,533 + MMP_RS04135 0.87 -0.1
786,701 - +2.2
786,730 - +0.3
786,747 - -0.4
786,773 - +0.1
786,774 + -0.2
786,790 - -0.6
786,791 + +0.3
786,852 - +0.1
786,856 - +0.3
786,860 + -0.0
786,873 - MMP_RS04140 0.10 +0.2
786,878 + MMP_RS04140 0.11 +0.2
786,898 - MMP_RS04140 0.15 -0.2
786,970 - MMP_RS04140 0.29 +0.3
786,970 - MMP_RS04140 0.29 -0.6
786,977 + MMP_RS04140 0.30 -0.2
786,985 + MMP_RS04140 0.32 +0.1
786,985 + MMP_RS04140 0.32 +0.2
786,986 - MMP_RS04140 0.32 +0.0
786,986 - MMP_RS04140 0.32 -0.1
786,987 + MMP_RS04140 0.32 -0.1
786,987 + MMP_RS04140 0.32 +0.4
786,987 + MMP_RS04140 0.32 -0.2
786,987 + MMP_RS04140 0.32 +0.1
786,987 + MMP_RS04140 0.32 +0.3
787,028 - MMP_RS04140 0.40 -0.5
787,038 - MMP_RS04140 0.42 -0.1
787,039 + MMP_RS04140 0.42 +1.0
787,042 + MMP_RS04140 0.43 +0.2
787,046 - MMP_RS04140 0.43 +1.1
787,046 - MMP_RS04140 0.43 +0.9
787,046 - MMP_RS04140 0.43 +0.2
787,048 - MMP_RS04140 0.44 -0.0
787,048 - MMP_RS04140 0.44 -0.1
787,049 + MMP_RS04140 0.44 -0.1
787,065 - MMP_RS04140 0.47 -0.4
787,078 - MMP_RS04140 0.50 -0.2
787,078 - MMP_RS04140 0.50 +0.0
787,078 - MMP_RS04140 0.50 -0.2
787,079 + MMP_RS04140 0.50 +0.4
787,079 + MMP_RS04140 0.50 -0.1
787,083 - MMP_RS04140 0.50 +2.0
787,088 - MMP_RS04140 0.51 -0.7
787,088 - MMP_RS04140 0.51 -0.3
787,094 + MMP_RS04140 0.53 +0.1
787,099 - MMP_RS04140 0.54 +0.5
787,129 + MMP_RS04140 0.59 +0.0
787,131 + MMP_RS04140 0.60 +1.8
787,164 + MMP_RS04140 0.66 +0.1
787,180 + MMP_RS04140 0.69 -0.6
787,180 + MMP_RS04140 0.69 +0.2
787,228 + MMP_RS04140 0.78 +0.7
787,256 + MMP_RS04140 0.84 +0.6
787,301 - -0.0
787,301 - +0.3
787,310 - -0.1
787,311 + +2.3
787,312 - +1.0
787,319 + +0.5
787,323 - -0.2
787,333 - +0.2
787,344 - +0.1
787,347 + -0.2
787,350 + +0.2
787,387 - +0.1
787,387 - +0.3
787,440 - -0.0
787,446 + -0.1
787,648 + MMP_RS04145 0.35 -0.0

Or see this region's nucleotide sequence