Strain Fitness in Pantoea sp. MT58 around IAI47_20810

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20805 and IAI47_20810 are separated by 15 nucleotidesIAI47_20810 and IAI47_20815 are separated by 3 nucleotidesIAI47_20815 and IAI47_20820 are separated by 21 nucleotides IAI47_20805: IAI47_20805 - ornithine cyclodeaminase family protein, at 406,467 to 407,438 _20805 IAI47_20810: IAI47_20810 - carboxymuconolactone decarboxylase family protein, at 407,454 to 407,999 _20810 IAI47_20815: IAI47_20815 - bacilysin biosynthesis protein BacA, at 408,003 to 408,590 _20815 IAI47_20820: IAI47_20820 - branched-chain amino acid transaminase, at 408,612 to 409,583 _20820 Position (kb) 407 408Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 406.469 kb on - strandat 406.478 kb on + strandat 406.479 kb on - strandat 406.556 kb on + strandat 406.557 kb on - strandat 406.557 kb on - strandat 406.617 kb on + strand, within IAI47_20805at 406.617 kb on + strand, within IAI47_20805at 406.617 kb on + strand, within IAI47_20805at 406.618 kb on - strand, within IAI47_20805at 406.618 kb on - strand, within IAI47_20805at 406.618 kb on - strand, within IAI47_20805at 406.644 kb on + strand, within IAI47_20805at 406.644 kb on + strand, within IAI47_20805at 406.647 kb on + strand, within IAI47_20805at 406.647 kb on + strand, within IAI47_20805at 406.648 kb on - strand, within IAI47_20805at 406.648 kb on - strand, within IAI47_20805at 406.668 kb on - strand, within IAI47_20805at 406.668 kb on - strand, within IAI47_20805at 406.668 kb on - strand, within IAI47_20805at 406.671 kb on + strand, within IAI47_20805at 406.672 kb on - strand, within IAI47_20805at 406.715 kb on - strand, within IAI47_20805at 406.732 kb on + strand, within IAI47_20805at 406.732 kb on + strand, within IAI47_20805at 406.732 kb on + strand, within IAI47_20805at 406.732 kb on + strand, within IAI47_20805at 406.733 kb on - strand, within IAI47_20805at 406.736 kb on + strand, within IAI47_20805at 406.736 kb on + strand, within IAI47_20805at 406.737 kb on - strand, within IAI47_20805at 406.737 kb on - strand, within IAI47_20805at 406.737 kb on - strand, within IAI47_20805at 406.787 kb on + strand, within IAI47_20805at 406.787 kb on + strand, within IAI47_20805at 406.788 kb on - strand, within IAI47_20805at 406.788 kb on - strand, within IAI47_20805at 406.847 kb on + strand, within IAI47_20805at 406.915 kb on + strand, within IAI47_20805at 406.915 kb on + strand, within IAI47_20805at 406.915 kb on + strand, within IAI47_20805at 406.916 kb on - strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.976 kb on + strand, within IAI47_20805at 406.977 kb on - strand, within IAI47_20805at 406.977 kb on - strand, within IAI47_20805at 406.977 kb on - strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.978 kb on + strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 406.979 kb on - strand, within IAI47_20805at 407.112 kb on + strand, within IAI47_20805at 407.112 kb on + strand, within IAI47_20805at 407.112 kb on + strand, within IAI47_20805at 407.112 kb on + strand, within IAI47_20805at 407.113 kb on - strand, within IAI47_20805at 407.170 kb on + strand, within IAI47_20805at 407.170 kb on + strand, within IAI47_20805at 407.181 kb on - strand, within IAI47_20805at 407.181 kb on - strand, within IAI47_20805at 407.181 kb on - strand, within IAI47_20805at 407.181 kb on - strand, within IAI47_20805at 407.181 kb on - strand, within IAI47_20805at 407.198 kb on + strand, within IAI47_20805at 407.198 kb on + strand, within IAI47_20805at 407.199 kb on - strand, within IAI47_20805at 407.199 kb on - strand, within IAI47_20805at 407.272 kb on + strand, within IAI47_20805at 407.272 kb on + strand, within IAI47_20805at 407.273 kb on - strand, within IAI47_20805at 407.336 kb on + strand, within IAI47_20805at 407.400 kb on + strandat 407.400 kb on + strandat 407.429 kb on + strandat 407.429 kb on + strandat 407.430 kb on - strandat 407.455 kb on + strandat 407.510 kb on + strand, within IAI47_20810at 407.510 kb on + strand, within IAI47_20810at 407.510 kb on + strand, within IAI47_20810at 407.510 kb on + strand, within IAI47_20810at 407.511 kb on - strand, within IAI47_20810at 407.511 kb on - strand, within IAI47_20810at 407.575 kb on + strand, within IAI47_20810at 407.575 kb on + strand, within IAI47_20810at 407.576 kb on - strand, within IAI47_20810at 407.613 kb on + strand, within IAI47_20810at 407.653 kb on + strand, within IAI47_20810at 407.653 kb on + strand, within IAI47_20810at 407.653 kb on + strand, within IAI47_20810at 407.653 kb on + strand, within IAI47_20810at 407.653 kb on + strand, within IAI47_20810at 407.654 kb on - strand, within IAI47_20810at 407.654 kb on - strand, within IAI47_20810at 407.654 kb on - strand, within IAI47_20810at 407.654 kb on - strand, within IAI47_20810at 407.654 kb on - strand, within IAI47_20810at 407.655 kb on + strand, within IAI47_20810at 407.656 kb on - strand, within IAI47_20810at 407.656 kb on - strand, within IAI47_20810at 407.729 kb on + strand, within IAI47_20810at 407.730 kb on - strand, within IAI47_20810at 407.730 kb on - strand, within IAI47_20810at 407.747 kb on + strand, within IAI47_20810at 407.748 kb on - strand, within IAI47_20810at 407.748 kb on - strand, within IAI47_20810at 407.748 kb on - strand, within IAI47_20810at 407.748 kb on - strand, within IAI47_20810at 407.763 kb on - strand, within IAI47_20810at 407.764 kb on + strand, within IAI47_20810at 407.764 kb on + strand, within IAI47_20810at 407.861 kb on - strand, within IAI47_20810at 407.861 kb on - strand, within IAI47_20810at 407.988 kb on - strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.044 kb on + strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.045 kb on - strandat 408.048 kb on + strandat 408.049 kb on - strandat 408.049 kb on - strandat 408.049 kb on - strandat 408.075 kb on - strand, within IAI47_20815at 408.116 kb on + strand, within IAI47_20815at 408.158 kb on + strand, within IAI47_20815at 408.158 kb on + strand, within IAI47_20815at 408.159 kb on - strand, within IAI47_20815at 408.185 kb on + strand, within IAI47_20815at 408.185 kb on + strand, within IAI47_20815at 408.185 kb on + strand, within IAI47_20815at 408.185 kb on + strand, within IAI47_20815at 408.185 kb on + strand, within IAI47_20815at 408.186 kb on - strand, within IAI47_20815at 408.186 kb on - strand, within IAI47_20815at 408.186 kb on - strand, within IAI47_20815at 408.186 kb on - strand, within IAI47_20815at 408.186 kb on - strand, within IAI47_20815at 408.190 kb on - strand, within IAI47_20815at 408.190 kb on - strand, within IAI47_20815at 408.275 kb on + strand, within IAI47_20815at 408.276 kb on - strand, within IAI47_20815at 408.304 kb on + strand, within IAI47_20815at 408.305 kb on - strand, within IAI47_20815at 408.318 kb on + strand, within IAI47_20815at 408.343 kb on + strand, within IAI47_20815at 408.343 kb on + strand, within IAI47_20815at 408.343 kb on + strand, within IAI47_20815at 408.364 kb on + strand, within IAI47_20815at 408.381 kb on + strand, within IAI47_20815at 408.381 kb on + strand, within IAI47_20815at 408.382 kb on - strand, within IAI47_20815at 408.385 kb on - strand, within IAI47_20815at 408.404 kb on + strand, within IAI47_20815at 408.424 kb on + strand, within IAI47_20815at 408.424 kb on + strand, within IAI47_20815at 408.425 kb on - strand, within IAI47_20815at 408.446 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.463 kb on + strand, within IAI47_20815at 408.502 kb on + strand, within IAI47_20815at 408.528 kb on + strand, within IAI47_20815at 408.528 kb on + strand, within IAI47_20815at 408.528 kb on + strand, within IAI47_20815at 408.529 kb on - strand, within IAI47_20815at 408.533 kb on + strandat 408.533 kb on + strandat 408.534 kb on - strandat 408.534 kb on - strandat 408.534 kb on - strandat 408.545 kb on - strandat 408.638 kb on + strandat 408.638 kb on + strandat 408.649 kb on - strandat 408.649 kb on - strandat 408.716 kb on + strand, within IAI47_20820at 408.716 kb on + strand, within IAI47_20820at 408.717 kb on - strand, within IAI47_20820at 408.717 kb on - strand, within IAI47_20820at 408.754 kb on - strand, within IAI47_20820at 408.813 kb on + strand, within IAI47_20820at 408.813 kb on + strand, within IAI47_20820at 408.814 kb on - strand, within IAI47_20820at 408.814 kb on - strand, within IAI47_20820at 408.814 kb on - strand, within IAI47_20820at 408.851 kb on + strand, within IAI47_20820at 408.881 kb on + strand, within IAI47_20820at 408.881 kb on + strand, within IAI47_20820at 408.882 kb on - strand, within IAI47_20820at 408.894 kb on - strand, within IAI47_20820at 408.894 kb on - strand, within IAI47_20820at 408.914 kb on + strand, within IAI47_20820at 408.914 kb on + strand, within IAI47_20820at 408.915 kb on - strand, within IAI47_20820at 408.970 kb on + strand, within IAI47_20820at 408.971 kb on - strand, within IAI47_20820at 408.971 kb on - strand, within IAI47_20820at 408.990 kb on + strand, within IAI47_20820at 408.990 kb on + strand, within IAI47_20820

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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406,469 - +2.5
406,478 + +2.1
406,479 - +1.6
406,556 + +0.4
406,557 - -0.3
406,557 - +1.4
406,617 + IAI47_20805 0.15 +1.0
406,617 + IAI47_20805 0.15 -0.7
406,617 + IAI47_20805 0.15 +1.4
406,618 - IAI47_20805 0.16 -0.0
406,618 - IAI47_20805 0.16 -2.0
406,618 - IAI47_20805 0.16 +0.5
406,644 + IAI47_20805 0.18 +1.3
406,644 + IAI47_20805 0.18 -1.1
406,647 + IAI47_20805 0.19 -1.5
406,647 + IAI47_20805 0.19 +1.3
406,648 - IAI47_20805 0.19 -0.4
406,648 - IAI47_20805 0.19 +0.3
406,668 - IAI47_20805 0.21 -1.4
406,668 - IAI47_20805 0.21 -1.0
406,668 - IAI47_20805 0.21 -1.4
406,671 + IAI47_20805 0.21 -0.4
406,672 - IAI47_20805 0.21 -1.1
406,715 - IAI47_20805 0.26 -1.6
406,732 + IAI47_20805 0.27 +0.6
406,732 + IAI47_20805 0.27 +0.6
406,732 + IAI47_20805 0.27 +0.5
406,732 + IAI47_20805 0.27 -0.4
406,733 - IAI47_20805 0.27 +2.1
406,736 + IAI47_20805 0.28 -1.4
406,736 + IAI47_20805 0.28 -0.7
406,737 - IAI47_20805 0.28 +0.2
406,737 - IAI47_20805 0.28 -1.6
406,737 - IAI47_20805 0.28 -2.4
406,787 + IAI47_20805 0.33 -1.6
406,787 + IAI47_20805 0.33 +0.6
406,788 - IAI47_20805 0.33 -1.6
406,788 - IAI47_20805 0.33 -1.5
406,847 + IAI47_20805 0.39 +1.0
406,915 + IAI47_20805 0.46 +0.3
406,915 + IAI47_20805 0.46 +0.6
406,915 + IAI47_20805 0.46 -1.0
406,916 - IAI47_20805 0.46 -2.1
406,976 + IAI47_20805 0.52 +0.9
406,976 + IAI47_20805 0.52 -1.5
406,976 + IAI47_20805 0.52 -1.0
406,976 + IAI47_20805 0.52 -1.4
406,976 + IAI47_20805 0.52 +1.1
406,976 + IAI47_20805 0.52 -1.2
406,977 - IAI47_20805 0.52 -0.4
406,977 - IAI47_20805 0.52 -0.4
406,977 - IAI47_20805 0.52 +0.1
406,978 + IAI47_20805 0.53 -1.2
406,978 + IAI47_20805 0.53 +1.1
406,978 + IAI47_20805 0.53 +0.8
406,978 + IAI47_20805 0.53 +0.4
406,978 + IAI47_20805 0.53 -0.4
406,978 + IAI47_20805 0.53 +1.5
406,979 - IAI47_20805 0.53 +1.4
406,979 - IAI47_20805 0.53 -2.7
406,979 - IAI47_20805 0.53 +0.8
406,979 - IAI47_20805 0.53 -1.7
406,979 - IAI47_20805 0.53 -1.6
406,979 - IAI47_20805 0.53 +0.2
406,979 - IAI47_20805 0.53 -1.2
406,979 - IAI47_20805 0.53 +0.6
406,979 - IAI47_20805 0.53 -2.3
406,979 - IAI47_20805 0.53 -1.0
407,112 + IAI47_20805 0.66 -0.1
407,112 + IAI47_20805 0.66 -1.6
407,112 + IAI47_20805 0.66 -1.7
407,112 + IAI47_20805 0.66 -0.6
407,113 - IAI47_20805 0.66 -0.4
407,170 + IAI47_20805 0.72 -0.2
407,170 + IAI47_20805 0.72 +2.3
407,181 - IAI47_20805 0.73 +1.6
407,181 - IAI47_20805 0.73 -1.2
407,181 - IAI47_20805 0.73 +1.4
407,181 - IAI47_20805 0.73 +0.7
407,181 - IAI47_20805 0.73 -0.2
407,198 + IAI47_20805 0.75 +2.6
407,198 + IAI47_20805 0.75 -2.2
407,199 - IAI47_20805 0.75 -0.4
407,199 - IAI47_20805 0.75 -1.4
407,272 + IAI47_20805 0.83 +1.2
407,272 + IAI47_20805 0.83 -1.1
407,273 - IAI47_20805 0.83 +1.7
407,336 + IAI47_20805 0.89 +1.3
407,400 + -2.0
407,400 + -0.7
407,429 + +1.6
407,429 + +0.4
407,430 - +1.3
407,455 + +1.1
407,510 + IAI47_20810 0.10 -0.7
407,510 + IAI47_20810 0.10 +0.2
407,510 + IAI47_20810 0.10 +2.3
407,510 + IAI47_20810 0.10 -0.4
407,511 - IAI47_20810 0.10 -0.0
407,511 - IAI47_20810 0.10 -0.7
407,575 + IAI47_20810 0.22 -1.9
407,575 + IAI47_20810 0.22 -1.6
407,576 - IAI47_20810 0.22 -1.6
407,613 + IAI47_20810 0.29 -0.6
407,653 + IAI47_20810 0.36 -1.3
407,653 + IAI47_20810 0.36 +0.8
407,653 + IAI47_20810 0.36 -0.9
407,653 + IAI47_20810 0.36 -1.0
407,653 + IAI47_20810 0.36 -0.3
407,654 - IAI47_20810 0.37 +2.3
407,654 - IAI47_20810 0.37 -2.0
407,654 - IAI47_20810 0.37 +0.6
407,654 - IAI47_20810 0.37 -4.3
407,654 - IAI47_20810 0.37 +0.1
407,655 + IAI47_20810 0.37 +2.8
407,656 - IAI47_20810 0.37 -1.2
407,656 - IAI47_20810 0.37 -1.9
407,729 + IAI47_20810 0.50 -1.2
407,730 - IAI47_20810 0.51 -0.4
407,730 - IAI47_20810 0.51 +0.3
407,747 + IAI47_20810 0.54 -1.4
407,748 - IAI47_20810 0.54 -0.2
407,748 - IAI47_20810 0.54 -0.0
407,748 - IAI47_20810 0.54 +0.8
407,748 - IAI47_20810 0.54 -0.7
407,763 - IAI47_20810 0.57 +0.8
407,764 + IAI47_20810 0.57 +0.4
407,764 + IAI47_20810 0.57 +0.9
407,861 - IAI47_20810 0.75 -0.1
407,861 - IAI47_20810 0.75 +0.4
407,988 - -0.4
408,044 + +2.2
408,044 + -1.7
408,044 + -2.5
408,044 + +0.8
408,044 + -1.2
408,044 + -1.9
408,044 + +1.1
408,044 + +0.7
408,044 + -1.4
408,044 + +1.6
408,044 + +0.9
408,044 + +1.1
408,045 - +2.5
408,045 - -0.0
408,045 - -0.0
408,045 - +2.5
408,045 - +1.2
408,045 - +0.3
408,045 - +0.9
408,045 - -0.7
408,045 - +0.3
408,045 - +1.9
408,045 - -0.1
408,045 - +0.1
408,045 - +2.4
408,045 - -2.3
408,048 + +1.0
408,049 - -1.4
408,049 - -0.2
408,049 - -1.9
408,075 - IAI47_20815 0.12 +1.2
408,116 + IAI47_20815 0.19 +0.2
408,158 + IAI47_20815 0.26 -0.4
408,158 + IAI47_20815 0.26 -0.7
408,159 - IAI47_20815 0.27 +0.6
408,185 + IAI47_20815 0.31 +1.1
408,185 + IAI47_20815 0.31 +0.8
408,185 + IAI47_20815 0.31 +0.6
408,185 + IAI47_20815 0.31 +0.1
408,185 + IAI47_20815 0.31 -0.7
408,186 - IAI47_20815 0.31 +0.1
408,186 - IAI47_20815 0.31 -2.0
408,186 - IAI47_20815 0.31 -2.0
408,186 - IAI47_20815 0.31 +1.9
408,186 - IAI47_20815 0.31 +1.4
408,190 - IAI47_20815 0.32 -1.4
408,190 - IAI47_20815 0.32 -0.6
408,275 + IAI47_20815 0.46 -1.6
408,276 - IAI47_20815 0.46 -1.6
408,304 + IAI47_20815 0.51 -1.0
408,305 - IAI47_20815 0.51 +0.1
408,318 + IAI47_20815 0.54 -0.3
408,343 + IAI47_20815 0.58 -0.1
408,343 + IAI47_20815 0.58 -1.6
408,343 + IAI47_20815 0.58 +0.0
408,364 + IAI47_20815 0.61 -0.4
408,381 + IAI47_20815 0.64 +0.3
408,381 + IAI47_20815 0.64 +0.1
408,382 - IAI47_20815 0.64 -0.4
408,385 - IAI47_20815 0.65 -0.5
408,404 + IAI47_20815 0.68 +0.9
408,424 + IAI47_20815 0.72 +0.6
408,424 + IAI47_20815 0.72 +0.6
408,425 - IAI47_20815 0.72 -0.3
408,446 + IAI47_20815 0.75 +1.1
408,463 + IAI47_20815 0.78 -1.6
408,463 + IAI47_20815 0.78 +0.4
408,463 + IAI47_20815 0.78 +0.1
408,463 + IAI47_20815 0.78 -2.6
408,463 + IAI47_20815 0.78 -0.9
408,463 + IAI47_20815 0.78 +1.3
408,502 + IAI47_20815 0.85 +1.6
408,528 + IAI47_20815 0.89 +0.7
408,528 + IAI47_20815 0.89 -0.9
408,528 + IAI47_20815 0.89 -0.0
408,529 - IAI47_20815 0.89 -1.4
408,533 + +1.1
408,533 + -1.4
408,534 - +0.2
408,534 - -1.0
408,534 - +0.5
408,545 - -0.1
408,638 + -2.1
408,638 + +0.8
408,649 - -1.2
408,649 - -2.0
408,716 + IAI47_20820 0.11 -0.7
408,716 + IAI47_20820 0.11 -1.0
408,717 - IAI47_20820 0.11 +1.1
408,717 - IAI47_20820 0.11 -2.2
408,754 - IAI47_20820 0.15 +0.5
408,813 + IAI47_20820 0.21 +2.6
408,813 + IAI47_20820 0.21 -0.6
408,814 - IAI47_20820 0.21 +1.0
408,814 - IAI47_20820 0.21 +0.1
408,814 - IAI47_20820 0.21 +0.2
408,851 + IAI47_20820 0.25 -0.6
408,881 + IAI47_20820 0.28 -1.4
408,881 + IAI47_20820 0.28 -1.7
408,882 - IAI47_20820 0.28 -2.1
408,894 - IAI47_20820 0.29 +3.0
408,894 - IAI47_20820 0.29 +2.2
408,914 + IAI47_20820 0.31 +1.3
408,914 + IAI47_20820 0.31 -0.0
408,915 - IAI47_20820 0.31 +1.6
408,970 + IAI47_20820 0.37 +0.6
408,971 - IAI47_20820 0.37 +0.5
408,971 - IAI47_20820 0.37 +1.1
408,990 + IAI47_20820 0.39 +0.6
408,990 + IAI47_20820 0.39 +0.9

Or see this region's nucleotide sequence