Strain Fitness in Pantoea sp. MT58 around IAI47_14415

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,042,804	+		IAI47_14405	0.66	+1.1
3,042,804	+		IAI47_14405	0.66	+1.2
3,042,804	+		IAI47_14405	0.66	+1.4
3,042,805	-		IAI47_14405	0.66	+0.2
3,042,815	+		IAI47_14405	0.67	+0.2
3,042,815	+		IAI47_14405	0.67	+1.5
3,042,816	-		IAI47_14405	0.67	+0.5
3,042,816	-		IAI47_14405	0.67	-2.3
3,042,841	-		IAI47_14405	0.70	+0.5
3,042,841	-		IAI47_14405	0.70	-1.1
3,042,841	-		IAI47_14405	0.70	+2.5
3,042,841	-		IAI47_14405	0.70	+2.5
3,042,841	-		IAI47_14405	0.70	+0.9
3,042,909	+		IAI47_14405	0.79	+0.2
3,042,909	+		IAI47_14405	0.79	+1.8
3,042,928	-		IAI47_14405	0.81	+0.8
3,042,945	+		IAI47_14405	0.83	+1.3
3,042,945	+		IAI47_14405	0.83	-1.7
3,042,946	-		IAI47_14405	0.83	+0.9
3,042,946	-		IAI47_14405	0.83	+2.8
3,042,946	-		IAI47_14405	0.83	-1.4
3,042,946	-		IAI47_14405	0.83	-1.9
3,042,946	-		IAI47_14405	0.83	+1.1
3,042,946	-		IAI47_14405	0.83	-2.4
3,043,009	+				-1.2
3,043,009	+				+2.2
3,043,010	-				-1.9
3,043,010	-				+1.1
3,043,010	-				+0.9
3,043,010	-				+0.9
3,043,010	-				-0.5
3,043,039	+				-0.5
3,043,039	+				-0.8
3,043,040	-				-0.5
3,043,040	-				-2.6
3,043,040	-				-0.2
3,043,050	+				-3.5
3,043,050	+				-0.9
3,043,050	+				-1.3
3,043,050	+				+0.1
3,043,050	+				-0.6
3,043,051	-				+0.5
3,043,051	-				-2.4
3,043,051	-				-1.5
3,043,129	+				+0.2
3,043,241	+				-0.3
3,043,242	-				-2.0
3,043,252	+				-2.6
3,043,310	+		IAI47_14410	0.12	-1.7
3,043,310	+		IAI47_14410	0.12	-1.5
3,043,311	-		IAI47_14410	0.12	-1.2
3,043,311	-		IAI47_14410	0.12	+0.2
3,043,386	-		IAI47_14410	0.28	-0.2
3,043,386	-		IAI47_14410	0.28	+0.2
3,043,386	-		IAI47_14410	0.28	-1.4
3,043,386	-		IAI47_14410	0.28	+2.1
3,043,386	-		IAI47_14410	0.28	+2.3
3,043,386	-		IAI47_14410	0.28	+2.9
3,043,386	-		IAI47_14410	0.28	+1.8
3,043,386	-		IAI47_14410	0.28	-1.0
3,043,386	-		IAI47_14410	0.28	-1.1
3,043,387	+		IAI47_14410	0.28	-0.3
3,043,388	-		IAI47_14410	0.28	+0.8
3,043,388	-		IAI47_14410	0.28	-1.7
3,043,388	-		IAI47_14410	0.28	-0.1
3,043,388	-		IAI47_14410	0.28	-1.7
3,043,388	-		IAI47_14410	0.28	+0.9
3,043,388	-		IAI47_14410	0.28	-1.8
3,043,507	+		IAI47_14410	0.53	-1.4
3,043,507	+		IAI47_14410	0.53	+2.1
3,043,507	+		IAI47_14410	0.53	-0.2
3,043,507	+		IAI47_14410	0.53	-2.2
3,043,508	-		IAI47_14410	0.53	-0.2
3,043,544	+		IAI47_14410	0.61	-0.7
3,043,559	-		IAI47_14410	0.64	+3.4
3,043,592	-		IAI47_14410	0.71	-1.7
3,043,592	-		IAI47_14410	0.71	+0.6
3,043,633	+		IAI47_14410	0.79	-2.0
3,043,633	+		IAI47_14410	0.79	+0.6
3,043,633	+		IAI47_14410	0.79	+0.8
3,043,633	+		IAI47_14410	0.79	-1.2
3,043,634	-		IAI47_14410	0.79	-0.8
3,043,645	+		IAI47_14410	0.82	-0.3
3,043,730	+				+0.2
3,043,730	+				-0.9
3,043,731	-				-2.2
3,043,821	+		IAI47_14415	0.11	-0.5
3,043,822	-		IAI47_14415	0.11	-1.4
3,043,822	-		IAI47_14415	0.11	-0.9
3,043,822	-		IAI47_14415	0.11	+0.4
3,043,930	+		IAI47_14415	0.23	+1.7
3,043,930	+		IAI47_14415	0.23	+0.8
3,043,930	+		IAI47_14415	0.23	+1.3
3,043,930	+		IAI47_14415	0.23	+1.4
3,043,930	+		IAI47_14415	0.23	+1.9
3,043,931	-		IAI47_14415	0.23	-1.6
3,043,931	-		IAI47_14415	0.23	+1.9
3,043,939	+		IAI47_14415	0.24	+0.5
3,043,939	+		IAI47_14415	0.24	+1.2
3,043,939	+		IAI47_14415	0.24	+0.7
3,043,939	+		IAI47_14415	0.24	-0.7
3,043,939	+		IAI47_14415	0.24	-2.9
3,043,939	+		IAI47_14415	0.24	-0.5
3,043,939	+		IAI47_14415	0.24	-1.2
3,043,939	+		IAI47_14415	0.24	+1.2
3,043,939	+		IAI47_14415	0.24	-1.7
3,043,939	+		IAI47_14415	0.24	-2.0
3,043,939	+		IAI47_14415	0.24	-1.3
3,043,939	+		IAI47_14415	0.24	+2.2
3,043,939	+		IAI47_14415	0.24	-0.6
3,043,940	-		IAI47_14415	0.24	+3.0
3,043,940	-		IAI47_14415	0.24	+0.4
3,043,940	-		IAI47_14415	0.24	-1.5
3,043,940	-		IAI47_14415	0.24	+0.9
3,043,943	+		IAI47_14415	0.25	+0.4
3,043,943	+		IAI47_14415	0.25	+0.3
3,043,943	+		IAI47_14415	0.25	-1.4
3,043,944	-		IAI47_14415	0.25	+0.8
3,043,944	-		IAI47_14415	0.25	+0.5
3,043,944	-		IAI47_14415	0.25	+1.2
3,043,944	-		IAI47_14415	0.25	+2.7
3,044,049	+		IAI47_14415	0.37	-0.5
3,044,049	+		IAI47_14415	0.37	-0.6
3,044,050	-		IAI47_14415	0.37	+0.2
3,044,052	+		IAI47_14415	0.37	-0.5
3,044,052	+		IAI47_14415	0.37	-0.5
3,044,052	+		IAI47_14415	0.37	-0.6
3,044,052	+		IAI47_14415	0.37	+1.4
3,044,052	+		IAI47_14415	0.37	-0.6
3,044,053	-		IAI47_14415	0.37	+0.7
3,044,053	-		IAI47_14415	0.37	-0.5
3,044,053	-		IAI47_14415	0.37	-1.4
3,044,053	-		IAI47_14415	0.37	+0.7
3,044,053	-		IAI47_14415	0.37	+0.6
3,044,053	-		IAI47_14415	0.37	+1.0
3,044,053	-		IAI47_14415	0.37	-2.9
3,044,053	-		IAI47_14415	0.37	-1.8
3,044,053	-		IAI47_14415	0.37	-2.2
3,044,053	-		IAI47_14415	0.37	-0.2
3,044,080	+		IAI47_14415	0.40	+1.8
3,044,080	+		IAI47_14415	0.40	-0.4
3,044,080	+		IAI47_14415	0.40	-1.2
3,044,127	+		IAI47_14415	0.46	-1.7
3,044,142	+		IAI47_14415	0.47	+0.8
3,044,142	+		IAI47_14415	0.47	+3.2
3,044,143	-		IAI47_14415	0.48	-1.0
3,044,143	-		IAI47_14415	0.48	+1.4
3,044,304	+		IAI47_14415	0.66	+0.8
3,044,304	+		IAI47_14415	0.66	-2.4
3,044,304	+		IAI47_14415	0.66	-1.9
3,044,305	-		IAI47_14415	0.66	+1.6
3,044,305	-		IAI47_14415	0.66	+3.2
3,044,305	-		IAI47_14415	0.66	+1.0
3,044,305	-		IAI47_14415	0.66	+3.4
3,044,344	+		IAI47_14415	0.71	+1.3
3,044,345	-		IAI47_14415	0.71	+1.3
3,044,401	-		IAI47_14415	0.77	+0.1
3,044,476	+		IAI47_14415	0.86	+2.3
3,044,477	-		IAI47_14415	0.86	+2.0
3,044,514	+				-0.5
3,044,515	-				+0.2
3,044,565	+				-2.4
3,044,565	+				+0.9
3,044,565	+				-1.4
3,044,565	+				+0.5
3,044,565	+				-3.2
3,044,565	+				+0.6
3,044,566	-				-0.1
3,044,591	+				-1.9
3,044,634	-				-0.8
3,044,638	+				-0.5
3,044,639	-				-1.0
3,044,639	-				+0.8
3,044,669	+				+0.0
3,044,683	+				+0.1
3,044,683	+				-2.9
3,044,683	+				+1.4
3,044,683	+				+0.6
3,044,684	-				+0.8
3,044,684	-				+2.5
3,044,705	+				-0.2
3,044,705	+				+0.1
3,044,706	-				+0.7
3,044,706	-				+0.9
3,044,706	-				+2.8
3,044,706	-				-1.6
3,044,714	+				-1.9
3,044,714	+				+1.0
3,044,714	+				+0.1
3,044,715	-				-1.2
3,044,715	-				+2.0
3,044,786	+		IAI47_14420	0.23	-0.4
3,044,786	+		IAI47_14420	0.23	-2.1
3,044,787	-		IAI47_14420	0.23	-0.5
3,044,787	-		IAI47_14420	0.23	+0.8
3,044,787	-		IAI47_14420	0.23	-0.7
3,044,819	+		IAI47_14420	0.30	-1.8
3,044,819	+		IAI47_14420	0.30	+0.1
3,044,819	+		IAI47_14420	0.30	+0.3
3,044,819	+		IAI47_14420	0.30	+1.8
3,044,842	+		IAI47_14420	0.36	+1.3
3,044,843	-		IAI47_14420	0.36	+0.6
3,044,843	-		IAI47_14420	0.36	+1.6
3,044,843	-		IAI47_14420	0.36	+1.8
3,044,856	+		IAI47_14420	0.39	-0.8
3,044,856	+		IAI47_14420	0.39	+2.7
3,044,856	+		IAI47_14420	0.39	+0.9
3,044,857	-		IAI47_14420	0.39	-0.2
3,044,857	-		IAI47_14420	0.39	+2.3
3,044,857	-		IAI47_14420	0.39	+2.2
3,044,857	-		IAI47_14420	0.39	+1.1
3,044,858	+		IAI47_14420	0.39	-1.1
3,044,880	+		IAI47_14420	0.44	-0.2
3,044,881	-		IAI47_14420	0.45	-0.4
3,044,881	-		IAI47_14420	0.45	+0.9
3,044,920	+		IAI47_14420	0.54	+0.3
3,044,920	+		IAI47_14420	0.54	+1.6
3,044,920	+		IAI47_14420	0.54	-1.0
3,044,920	+		IAI47_14420	0.54	-2.1
3,044,920	+		IAI47_14420	0.54	-0.5
3,044,921	-		IAI47_14420	0.54	+2.3
3,044,921	-		IAI47_14420	0.54	+0.4
3,044,948	+		IAI47_14420	0.60	+0.6
3,044,948	+		IAI47_14420	0.60	+0.3
3,044,988	-		IAI47_14420	0.69	-0.4
3,045,013	+		IAI47_14420	0.75	-0.2
3,045,013	+		IAI47_14420	0.75	-0.9
3,045,045	+		IAI47_14420	0.83	-1.2
3,045,045	+		IAI47_14420	0.83	-1.2
3,045,045	+		IAI47_14420	0.83	-0.2
3,045,045	+		IAI47_14420	0.83	+0.8
3,045,046	-		IAI47_14420	0.83	+1.3
3,045,046	-		IAI47_14420	0.83	-1.2
3,045,057	+		IAI47_14420	0.85	-0.8
3,045,057	+		IAI47_14420	0.85	+0.2
3,045,057	+		IAI47_14420	0.85	+1.3
3,045,058	-		IAI47_14420	0.86	+1.1
3,045,058	-		IAI47_14420	0.86	+0.1
3,045,058	-		IAI47_14420	0.86	-2.5
3,045,058	-		IAI47_14420	0.86	+2.3
3,045,095	+				+2.1
3,045,095	+				+0.5
3,045,095	+				+0.0
3,045,118	-				-2.8
3,045,118	-				+3.0
3,045,118	-				-1.0
3,045,118	-				-0.2
3,045,118	-				+0.4
3,045,118	-				-0.0
3,045,163	-				+0.2
3,045,215	+				-0.3
3,045,216	-				-1.8
3,045,219	+				-0.2
3,045,219	+				+0.0
3,045,219	+				+0.1
3,045,219	+				-0.5
3,045,219	+				-1.7
3,045,219	+				+0.6
3,045,219	+				-1.4
3,045,220	-				+1.1
3,045,220	-				+1.1
3,045,302	+				+0.8
3,045,333	+		IAI47_14425	0.10	+3.2
3,045,334	-		IAI47_14425	0.10	+1.8
3,045,407	+		IAI47_14425	0.14	+1.8
3,045,453	-		IAI47_14425	0.17	+0.9
3,045,507	+		IAI47_14425	0.20	-2.0
3,045,507	+		IAI47_14425	0.20	-1.1
3,045,507	+		IAI47_14425	0.20	-0.4
3,045,508	-		IAI47_14425	0.20	+0.2
3,045,567	+		IAI47_14425	0.23	+2.6
3,045,567	+		IAI47_14425	0.23	-0.2
3,045,567	+		IAI47_14425	0.23	+0.2
3,045,568	-		IAI47_14425	0.23	-3.2
3,045,568	-		IAI47_14425	0.23	-2.7
3,045,570	+		IAI47_14425	0.24	-0.8
3,045,570	+		IAI47_14425	0.24	+0.5
3,045,571	-		IAI47_14425	0.24	-2.5
3,045,571	-		IAI47_14425	0.24	-0.8
3,045,571	-		IAI47_14425	0.24	-0.3