Strain Fitness in Pantoea sp. MT58 around IAI47_05745

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,194,658	+				+3.3
1,194,659	-				+0.6
1,194,659	-				+0.5
1,194,741	-		IAI47_05730	0.19	+0.7
1,194,752	+		IAI47_05730	0.21	+1.2
1,194,753	-		IAI47_05730	0.21	-0.8
1,194,762	-		IAI47_05730	0.22	+0.9
1,194,907	+		IAI47_05730	0.43	-1.8
1,194,907	+		IAI47_05730	0.43	-1.4
1,194,907	+		IAI47_05730	0.43	+0.2
1,194,907	+		IAI47_05730	0.43	+1.0
1,194,984	-		IAI47_05730	0.55	+0.5
1,195,018	+		IAI47_05730	0.60	+0.0
1,195,022	+		IAI47_05730	0.60	-0.4
1,195,085	+		IAI47_05730	0.69	+0.3
1,195,085	+		IAI47_05730	0.69	-3.5
1,195,085	+		IAI47_05730	0.69	+0.3
1,195,085	+		IAI47_05730	0.69	-0.4
1,195,085	+		IAI47_05730	0.69	+1.6
1,195,085	+		IAI47_05730	0.69	-0.8
1,195,086	-		IAI47_05730	0.70	-0.3
1,195,086	-		IAI47_05730	0.70	+2.4
1,195,086	-		IAI47_05730	0.70	-1.1
1,195,086	-		IAI47_05730	0.70	-1.7
1,195,086	-		IAI47_05730	0.70	+1.2
1,195,086	-		IAI47_05730	0.70	-0.9
1,195,086	-		IAI47_05730	0.70	-1.1
1,195,086	-		IAI47_05730	0.70	-0.6
1,195,086	-		IAI47_05730	0.70	-0.6
1,195,086	-		IAI47_05730	0.70	+0.6
1,195,086	-		IAI47_05730	0.70	+0.9
1,195,086	-		IAI47_05730	0.70	-1.2
1,195,088	+		IAI47_05730	0.70	+0.0
1,195,088	+		IAI47_05730	0.70	-0.7
1,195,088	+		IAI47_05730	0.70	+1.5
1,195,088	+		IAI47_05730	0.70	-1.3
1,195,089	-		IAI47_05730	0.70	+2.3
1,195,089	-		IAI47_05730	0.70	-2.0
1,195,089	-		IAI47_05730	0.70	+0.5
1,195,089	-		IAI47_05730	0.70	+1.5
1,195,089	-		IAI47_05730	0.70	+0.8
1,195,112	+		IAI47_05730	0.73	+0.7
1,195,113	-		IAI47_05730	0.74	-0.1
1,195,113	-		IAI47_05730	0.74	+0.1
1,195,113	-		IAI47_05730	0.74	-0.3
1,195,113	-		IAI47_05730	0.74	+1.8
1,195,113	-		IAI47_05730	0.74	+1.3
1,195,113	-		IAI47_05730	0.74	-1.5
1,195,113	-		IAI47_05730	0.74	-1.4
1,195,130	+		IAI47_05730	0.76	-0.5
1,195,130	+		IAI47_05730	0.76	+0.4
1,195,130	+		IAI47_05730	0.76	+1.2
1,195,130	+		IAI47_05730	0.76	+0.2
1,195,131	-		IAI47_05730	0.76	+0.7
1,195,131	-		IAI47_05730	0.76	+0.4
1,195,131	-		IAI47_05730	0.76	+1.5
1,195,131	-		IAI47_05730	0.76	-2.7
1,195,149	-		IAI47_05730	0.79	-0.1
1,195,175	+		IAI47_05730	0.83	-0.6
1,195,175	+		IAI47_05730	0.83	+0.9
1,195,175	+		IAI47_05730	0.83	+0.9
1,195,202	+		IAI47_05730	0.87	+1.9
1,195,202	+		IAI47_05730	0.87	-2.5
1,195,202	+		IAI47_05730	0.87	+1.4
1,195,215	+		IAI47_05730	0.89	+1.2
1,195,229	+				-3.3
1,195,229	+				+0.4
1,195,229	+				+0.0
1,195,229	+				+0.7
1,195,230	-				+1.3
1,195,230	-				-0.3
1,195,232	+				+1.3
1,195,232	+				+0.7
1,195,233	-				+0.6
1,195,233	-				-0.3
1,195,275	+				-0.4
1,195,275	+				-0.4
1,195,275	+				-1.6
1,195,286	+				+0.5
1,195,287	-				-1.4
1,195,287	-				+0.8
1,195,287	-				+0.9
1,195,287	-				-2.4
1,195,297	+				+0.4
1,195,297	+				-1.0
1,195,297	+				+0.7
1,195,298	-				-0.8
1,195,327	+		IAI47_05735	0.24	+0.3
1,195,327	+		IAI47_05735	0.24	-0.3
1,195,365	+		IAI47_05735	0.50	+0.2
1,195,365	+		IAI47_05735	0.50	-1.3
1,195,365	+		IAI47_05735	0.50	-1.6
1,195,366	-		IAI47_05735	0.50	-0.1
1,195,366	-		IAI47_05735	0.50	+5.7
1,195,366	-		IAI47_05735	0.50	+2.6
1,195,366	-		IAI47_05735	0.50	-1.1
1,195,366	-		IAI47_05735	0.50	+0.1
1,195,366	-		IAI47_05735	0.50	+4.7
1,195,382	+		IAI47_05735	0.61	+3.6
1,195,383	-		IAI47_05735	0.62	+1.0
1,195,430	-				+3.2
1,195,454	+		IAI47_05740	0.13	-3.4
1,195,455	-		IAI47_05740	0.14	+1.7
1,195,455	-		IAI47_05740	0.14	-0.7
1,195,455	-		IAI47_05740	0.14	+2.2
1,195,513	+		IAI47_05740	0.43	+1.5
1,195,513	+		IAI47_05740	0.43	-0.8
1,195,513	+		IAI47_05740	0.43	+0.7
1,195,513	+		IAI47_05740	0.43	+0.6
1,195,514	-		IAI47_05740	0.43	-0.0
1,195,514	-		IAI47_05740	0.43	+0.7
1,195,514	-		IAI47_05740	0.43	-0.8
1,195,514	-		IAI47_05740	0.43	-1.3
1,195,514	-		IAI47_05740	0.43	-1.1
1,195,514	-		IAI47_05740	0.43	+1.3
1,195,526	+		IAI47_05740	0.49	-0.1
1,195,526	+		IAI47_05740	0.49	+0.4
1,195,526	+		IAI47_05740	0.49	+0.5
1,195,526	+		IAI47_05740	0.49	-3.1
1,195,526	+		IAI47_05740	0.49	+1.7
1,195,527	-		IAI47_05740	0.50	-1.3
1,195,527	-		IAI47_05740	0.50	-1.1
1,195,527	-		IAI47_05740	0.50	-0.8
1,195,527	-		IAI47_05740	0.50	-0.7
1,195,527	-		IAI47_05740	0.50	-2.8
1,195,558	+		IAI47_05740	0.66	+0.3
1,195,558	+		IAI47_05740	0.66	-0.5
1,195,558	+		IAI47_05740	0.66	-0.6
1,195,558	+		IAI47_05740	0.66	+0.3
1,195,559	-		IAI47_05740	0.66	-2.0
1,195,616	+				+0.7
1,195,715	+		IAI47_05745	0.66	-3.1
1,195,715	+		IAI47_05745	0.66	-1.4
1,195,715	+		IAI47_05745	0.66	-0.0
1,195,755	+				-0.6
1,195,755	+				+2.3
1,195,755	+				+0.1
1,195,755	+				-2.3
1,195,755	+				-0.3
1,195,755	+				+1.4
1,195,755	+				-0.2
1,195,755	-				+3.1
1,195,756	-				-0.8
1,195,756	-				+0.5
1,195,756	-				-1.0
1,195,756	-				-0.3
1,195,756	-				-2.3
1,195,790	+				+0.7
1,195,790	+				-2.4
1,195,790	+				+1.3
1,195,790	+				-1.2
1,195,790	+				+0.0
1,195,791	-				-1.2
1,195,791	-				+3.2
1,195,791	-				+0.3
1,195,793	+				+2.8
1,195,793	+				-0.4
1,195,793	+				+1.6
1,195,793	+				+1.0
1,195,793	+				+0.1
1,195,793	+				+4.2
1,195,793	+				-0.7
1,195,794	-				+1.3
1,195,794	-				-1.8
1,195,794	-				-1.3
1,195,806	+				-1.7
1,195,806	+				-0.6
1,195,863	+				+0.6
1,195,864	-				-0.6
1,195,882	+				+1.7
1,196,022	+		IAI47_05750	0.24	+3.0
1,196,022	+		IAI47_05750	0.24	-2.6
1,196,022	+		IAI47_05750	0.24	+3.1
1,196,022	+		IAI47_05750	0.24	-1.8
1,196,023	-		IAI47_05750	0.24	+3.0
1,196,023	-		IAI47_05750	0.24	+0.2
1,196,149	-		IAI47_05750	0.37	-0.4
1,196,509	+		IAI47_05750	0.74	-2.2
1,196,509	+		IAI47_05750	0.74	-0.1
1,196,510	-		IAI47_05750	0.74	-0.7
1,196,510	-		IAI47_05750	0.74	-1.8
1,196,510	-		IAI47_05750	0.74	+0.4
1,196,517	+		IAI47_05750	0.75	+1.5
1,196,517	+		IAI47_05750	0.75	+2.3
1,196,517	+		IAI47_05750	0.75	-3.0
1,196,517	+		IAI47_05750	0.75	-3.0
1,196,517	+		IAI47_05750	0.75	-0.7
1,196,517	+		IAI47_05750	0.75	-1.3
1,196,517	+		IAI47_05750	0.75	+3.3
1,196,517	+		IAI47_05750	0.75	-0.4
1,196,517	+		IAI47_05750	0.75	+1.3
1,196,518	-		IAI47_05750	0.75	-0.3
1,196,518	-		IAI47_05750	0.75	-1.1
1,196,518	-		IAI47_05750	0.75	+2.6
1,196,518	-		IAI47_05750	0.75	+0.3
1,196,518	-		IAI47_05750	0.75	+1.5
1,196,518	-		IAI47_05750	0.75	+2.7
1,196,518	-		IAI47_05750	0.75	+1.0
1,196,521	+		IAI47_05750	0.75	+0.6
1,196,522	-		IAI47_05750	0.75	+1.1
1,196,522	-		IAI47_05750	0.75	-1.3
1,196,522	-		IAI47_05750	0.75	+1.3
1,196,522	-		IAI47_05750	0.75	-0.6
1,196,569	+		IAI47_05750	0.80	-1.4
1,196,569	+		IAI47_05750	0.80	-0.9
1,196,569	+		IAI47_05750	0.80	+0.6
1,196,569	+		IAI47_05750	0.80	-0.6
1,196,569	+		IAI47_05750	0.80	-0.0
1,196,569	+		IAI47_05750	0.80	+0.7
1,196,569	+		IAI47_05750	0.80	+0.6
1,196,569	+		IAI47_05750	0.80	+0.6
1,196,569	+		IAI47_05750	0.80	-1.6
1,196,570	-		IAI47_05750	0.80	-0.8
1,196,570	-		IAI47_05750	0.80	+0.6
1,196,570	-		IAI47_05750	0.80	-0.3
1,196,570	-		IAI47_05750	0.80	+2.1
1,196,570	-		IAI47_05750	0.80	-1.3
1,196,570	-		IAI47_05750	0.80	+1.8
1,196,570	-		IAI47_05750	0.80	-0.4
1,196,584	+		IAI47_05750	0.82	+0.1
1,196,675	+				-2.4
1,196,676	-				-0.2
1,196,676	-				+0.9
1,196,676	-				-0.3
1,196,676	-				-0.1
1,196,676	-				+1.9
1,196,695	+				-1.1
1,196,699	+				-2.0
1,196,699	+				-1.1
1,196,699	+				-0.7
1,196,699	+				-0.6
1,196,699	+				-0.4
1,196,699	+				-1.8
1,196,699	+				+1.4
1,196,699	+				-1.1
1,196,700	-				+0.4
1,196,700	-				-2.4
1,196,700	-				-0.2
1,196,700	-				+0.7
1,196,700	-				-1.0
1,196,700	-				+2.0
1,196,700	-				+0.9
1,196,700	-				-0.8
1,196,700	-				-0.7
1,196,700	-				-0.5
1,196,700	-				+0.5
1,196,700	-				-1.6
1,196,700	-				+2.0
1,196,700	-				+1.5
1,196,700	-				+2.2
1,196,700	-				-1.0
1,196,740	+				-0.4
1,196,741	-				+0.2