Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03925 and IAI47_03930 overlap by 4 nucleotides IAI47_03930 and IAI47_03935 are separated by 191 nucleotides IAI47_03935 and IAI47_03940 overlap by 4 nucleotides
IAI47_03925: IAI47_03925 - prolipoprotein diacylglyceryl transferase, at 818,640 to 819,521
_03925
IAI47_03930: IAI47_03930 - thymidylate synthase, at 819,518 to 820,312
_03930
IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974
_03935
IAI47_03940: IAI47_03940 - prepilin peptidase-dependent protein, at 820,971 to 821,498
_03940
Position (kb) 819
820
821 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 818.570 kb on + strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 820.320 kb on + strand at 820.320 kb on + strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.325 kb on - strand at 820.331 kb on + strand at 820.332 kb on - strand at 820.332 kb on - strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.459 kb on - strand at 820.485 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.530 kb on + strand at 820.530 kb on + strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.692 kb on + strand, within IAI47_03935 at 820.693 kb on - strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.735 kb on - strand, within IAI47_03935 at 820.787 kb on - strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 821.116 kb on + strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 818,570 + -1.0 818,570 + -2.0 818,570 + -0.6 818,590 + -2.2 818,590 + -0.2 818,590 + -1.2 818,590 + -0.5 818,590 + +1.1 818,590 + +0.7 820,320 + -0.4 820,320 + +2.9 820,321 - -0.9 820,321 - -1.0 820,321 - +1.8 820,324 + -0.4 820,324 + +1.4 820,324 + -1.9 820,324 + -2.6 820,325 - +0.6 820,331 + -2.2 820,332 - +2.4 820,332 - +1.8 820,429 + +1.6 820,429 + -2.4 820,429 + -0.3 820,430 - +0.7 820,430 - +0.1 820,430 - +0.2 820,430 - +1.1 820,459 - +0.1 820,485 + -0.1 820,516 + -0.0 820,516 + +0.9 820,516 + +0.9 820,516 + -1.7 820,516 + +3.4 820,516 + +0.6 820,516 + -2.5 820,516 + -2.2 820,517 - +0.4 820,517 - -1.7 820,517 - +2.8 820,517 - +3.4 820,517 - +0.2 820,517 - +0.1 820,517 - -0.7 820,517 - +1.5 820,517 - -1.5 820,520 + -0.7 820,520 + +0.8 820,520 + +1.8 820,520 + +0.4 820,520 + -0.6 820,520 + +2.4 820,520 + +1.1 820,520 + +0.6 820,520 + -0.2 820,520 + -1.0 820,520 + +0.5 820,521 - +0.9 820,521 - +0.4 820,521 - +0.1 820,521 - -2.7 820,521 - -1.0 820,521 - -1.1 820,521 - -0.5 820,521 - -0.8 820,521 - +1.5 820,521 - +0.2 820,521 - -1.3 820,521 - -2.9 820,521 - +1.2 820,521 - -0.4 820,521 - +1.8 820,521 - -0.8 820,521 - +0.5 820,521 - -0.4 820,530 + +0.1 820,530 + +0.7 820,531 - +1.0 820,531 - +0.5 820,531 - +0.5 820,692 + IAI47_03935 0.40 +1.5 820,693 - IAI47_03935 0.40 +0.9 820,706 + IAI47_03935 0.43 -0.4 820,706 + IAI47_03935 0.43 +2.9 820,707 - IAI47_03935 0.43 +0.2 820,707 - IAI47_03935 0.43 +0.6 820,707 - IAI47_03935 0.43 -1.2 820,707 - IAI47_03935 0.43 -1.9 820,734 + IAI47_03935 0.49 -2.0 820,734 + IAI47_03935 0.49 -3.1 820,734 + IAI47_03935 0.49 -0.8 820,735 - IAI47_03935 0.49 -0.5 820,787 - IAI47_03935 0.60 -0.4 820,819 + IAI47_03935 0.67 +0.1 820,819 + IAI47_03935 0.67 -4.1 820,819 + IAI47_03935 0.67 +0.6 820,819 + IAI47_03935 0.67 +1.0 820,819 + IAI47_03935 0.67 -0.5 820,820 - IAI47_03935 0.67 +1.0 820,820 - IAI47_03935 0.67 +0.2 820,820 - IAI47_03935 0.67 -0.6 820,820 - IAI47_03935 0.67 +0.7 820,820 - IAI47_03935 0.67 -0.5 820,820 - IAI47_03935 0.67 -1.1 820,846 + IAI47_03935 0.73 -1.2 820,846 + IAI47_03935 0.73 -0.2 820,847 - IAI47_03935 0.73 +1.8 820,847 - IAI47_03935 0.73 +1.1 820,847 - IAI47_03935 0.73 +0.4 820,847 - IAI47_03935 0.73 -2.3 820,847 - IAI47_03935 0.73 -0.3 820,907 + IAI47_03935 0.86 +1.2 820,907 + IAI47_03935 0.86 -0.3 820,907 + IAI47_03935 0.86 -1.2 820,908 - IAI47_03935 0.86 +0.1 820,908 - IAI47_03935 0.86 -0.2 820,908 - IAI47_03935 0.86 -0.3 820,918 - IAI47_03935 0.88 +0.2 820,918 - IAI47_03935 0.88 +1.2 820,918 - IAI47_03935 0.88 +0.6 820,918 - IAI47_03935 0.88 -0.6 820,918 - IAI47_03935 0.88 -0.7 820,918 - IAI47_03935 0.88 -0.4 820,918 - IAI47_03935 0.88 -0.5 821,116 + IAI47_03940 0.27 -0.6 821,117 - IAI47_03940 0.28 -1.0 821,117 - IAI47_03940 0.28 -1.7 821,117 - IAI47_03940 0.28 -1.2 821,164 - IAI47_03940 0.37 -0.6 821,164 - IAI47_03940 0.37 +0.4 821,280 + IAI47_03940 0.59 +0.7 821,280 + IAI47_03940 0.59 -0.1 821,281 - IAI47_03940 0.59 -0.5 821,281 - IAI47_03940 0.59 +0.4 821,281 - IAI47_03940 0.59 -2.2 821,281 - IAI47_03940 0.59 +0.6 821,283 + IAI47_03940 0.59 +1.4 821,283 + IAI47_03940 0.59 +0.6 821,283 + IAI47_03940 0.59 +0.9 821,283 + IAI47_03940 0.59 +2.0 821,283 + IAI47_03940 0.59 -0.1 821,283 + IAI47_03940 0.59 -1.8 821,283 + IAI47_03940 0.59 +2.7 821,283 + IAI47_03940 0.59 -0.5 821,284 - IAI47_03940 0.59 -1.8 821,284 - IAI47_03940 0.59 -2.4 821,284 - IAI47_03940 0.59 -0.3 821,284 - IAI47_03940 0.59 -2.0
Or see this region's nucleotide sequence