Strain Fitness in Pantoea sp. MT58 around IAI47_03610

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03600 and IAI47_03605 overlap by 7 nucleotidesIAI47_03605 and IAI47_03610 overlap by 1 nucleotidesIAI47_03610 and IAI47_03615 are separated by 87 nucleotides IAI47_03600: IAI47_03600 - type IV pilus twitching motility protein PilT, at 750,312 to 751,319 _03600 IAI47_03605: IAI47_03605 - Holliday junction resolvase RuvX, at 751,313 to 751,732 _03605 IAI47_03610: IAI47_03610 - YqgE/AlgH family protein, at 751,732 to 752,295 _03610 IAI47_03615: IAI47_03615 - glutathione synthase, at 752,383 to 753,327 _03615 Position (kb) 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 750.776 kb on + strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.777 kb on - strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.782 kb on + strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.783 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.881 kb on - strand, within IAI47_03600at 750.958 kb on + strand, within IAI47_03600at 751.024 kb on + strand, within IAI47_03600at 751.025 kb on - strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.159 kb on + strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.160 kb on - strand, within IAI47_03600at 751.228 kb on + strandat 751.229 kb on - strandat 751.301 kb on + strandat 751.317 kb on + strandat 751.318 kb on - strandat 751.713 kb on - strandat 751.713 kb on - strandat 751.768 kb on - strandat 751.780 kb on - strandat 751.780 kb on - strandat 751.780 kb on - strandat 751.840 kb on - strand, within IAI47_03610at 751.908 kb on - strand, within IAI47_03610at 751.908 kb on - strand, within IAI47_03610at 752.017 kb on - strand, within IAI47_03610at 752.017 kb on - strand, within IAI47_03610at 752.044 kb on - strand, within IAI47_03610at 752.176 kb on - strand, within IAI47_03610at 752.179 kb on - strand, within IAI47_03610at 752.208 kb on + strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.209 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.223 kb on - strand, within IAI47_03610at 752.288 kb on - strandat 752.288 kb on - strandat 752.346 kb on - strandat 752.458 kb on + strandat 752.458 kb on + strandat 752.458 kb on + strandat 752.458 kb on + strandat 752.459 kb on - strandat 752.459 kb on - strandat 752.459 kb on - strandat 752.482 kb on - strand, within IAI47_03615at 752.482 kb on - strand, within IAI47_03615at 752.482 kb on - strand, within IAI47_03615at 752.496 kb on + strand, within IAI47_03615at 752.497 kb on - strand, within IAI47_03615at 752.587 kb on + strand, within IAI47_03615at 752.587 kb on + strand, within IAI47_03615at 752.667 kb on - strand, within IAI47_03615at 752.667 kb on - strand, within IAI47_03615at 752.729 kb on + strand, within IAI47_03615at 752.729 kb on + strand, within IAI47_03615at 752.729 kb on + strand, within IAI47_03615at 752.729 kb on + strand, within IAI47_03615at 752.729 kb on + strand, within IAI47_03615at 752.730 kb on - strand, within IAI47_03615at 752.730 kb on - strand, within IAI47_03615at 752.794 kb on - strand, within IAI47_03615at 752.794 kb on - strand, within IAI47_03615at 752.794 kb on - strand, within IAI47_03615at 752.821 kb on - strand, within IAI47_03615at 752.835 kb on + strand, within IAI47_03615at 752.835 kb on + strand, within IAI47_03615at 752.835 kb on + strand, within IAI47_03615at 752.836 kb on - strand, within IAI47_03615at 752.836 kb on - strand, within IAI47_03615at 752.836 kb on - strand, within IAI47_03615at 752.859 kb on + strand, within IAI47_03615at 752.859 kb on + strand, within IAI47_03615at 752.859 kb on + strand, within IAI47_03615at 752.859 kb on + strand, within IAI47_03615at 752.860 kb on - strand, within IAI47_03615at 752.925 kb on + strand, within IAI47_03615at 752.948 kb on + strand, within IAI47_03615at 752.949 kb on - strand, within IAI47_03615at 752.949 kb on - strand, within IAI47_03615at 752.949 kb on - strand, within IAI47_03615at 752.949 kb on - strand, within IAI47_03615at 752.986 kb on - strand, within IAI47_03615at 753.029 kb on + strand, within IAI47_03615at 753.029 kb on + strand, within IAI47_03615at 753.029 kb on + strand, within IAI47_03615at 753.030 kb on - strand, within IAI47_03615at 753.030 kb on - strand, within IAI47_03615at 753.038 kb on + strand, within IAI47_03615at 753.038 kb on + strand, within IAI47_03615at 753.038 kb on + strand, within IAI47_03615at 753.039 kb on - strand, within IAI47_03615at 753.039 kb on - strand, within IAI47_03615at 753.039 kb on - strand, within IAI47_03615at 753.219 kb on - strand, within IAI47_03615at 753.219 kb on - strand, within IAI47_03615at 753.279 kb on + strandat 753.283 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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750,776 + IAI47_03600 0.46 -0.2
750,777 - IAI47_03600 0.46 -0.1
750,777 - IAI47_03600 0.46 -0.5
750,782 + IAI47_03600 0.47 -1.0
750,782 + IAI47_03600 0.47 -0.4
750,783 - IAI47_03600 0.47 +0.4
750,783 - IAI47_03600 0.47 +1.1
750,881 - IAI47_03600 0.56 +1.8
750,881 - IAI47_03600 0.56 +0.5
750,958 + IAI47_03600 0.64 +1.3
751,024 + IAI47_03600 0.71 -0.5
751,025 - IAI47_03600 0.71 +0.7
751,159 + IAI47_03600 0.84 -1.7
751,159 + IAI47_03600 0.84 -1.4
751,160 - IAI47_03600 0.84 +0.9
751,160 - IAI47_03600 0.84 -0.1
751,160 - IAI47_03600 0.84 -1.9
751,160 - IAI47_03600 0.84 -2.1
751,228 + -0.2
751,229 - +0.9
751,301 + +2.8
751,317 + -1.6
751,318 - -2.1
751,713 - -1.0
751,713 - -0.5
751,768 - -2.1
751,780 - +0.8
751,780 - -2.0
751,780 - +0.3
751,840 - IAI47_03610 0.19 -1.0
751,908 - IAI47_03610 0.31 -1.6
751,908 - IAI47_03610 0.31 -0.5
752,017 - IAI47_03610 0.51 -1.6
752,017 - IAI47_03610 0.51 -0.8
752,044 - IAI47_03610 0.55 -1.2
752,176 - IAI47_03610 0.79 -3.2
752,179 - IAI47_03610 0.79 -1.8
752,208 + IAI47_03610 0.84 -0.2
752,209 - IAI47_03610 0.85 -1.9
752,209 - IAI47_03610 0.85 +0.0
752,209 - IAI47_03610 0.85 -0.7
752,223 - IAI47_03610 0.87 +0.4
752,223 - IAI47_03610 0.87 -3.1
752,223 - IAI47_03610 0.87 -1.5
752,223 - IAI47_03610 0.87 -1.6
752,223 - IAI47_03610 0.87 -1.5
752,288 - -0.1
752,288 - -0.2
752,346 - +2.8
752,458 + +3.0
752,458 + +1.0
752,458 + -0.5
752,458 + -0.0
752,459 - -0.0
752,459 - -1.0
752,459 - -0.5
752,482 - IAI47_03615 0.10 -0.3
752,482 - IAI47_03615 0.10 +0.7
752,482 - IAI47_03615 0.10 +1.5
752,496 + IAI47_03615 0.12 -0.5
752,497 - IAI47_03615 0.12 -0.5
752,587 + IAI47_03615 0.22 -2.0
752,587 + IAI47_03615 0.22 +0.1
752,667 - IAI47_03615 0.30 -0.2
752,667 - IAI47_03615 0.30 +1.3
752,729 + IAI47_03615 0.37 -0.5
752,729 + IAI47_03615 0.37 +1.1
752,729 + IAI47_03615 0.37 +0.6
752,729 + IAI47_03615 0.37 -0.2
752,729 + IAI47_03615 0.37 -0.8
752,730 - IAI47_03615 0.37 -0.4
752,730 - IAI47_03615 0.37 +0.4
752,794 - IAI47_03615 0.43 +1.7
752,794 - IAI47_03615 0.43 -1.2
752,794 - IAI47_03615 0.43 -0.8
752,821 - IAI47_03615 0.46 -1.1
752,835 + IAI47_03615 0.48 -2.0
752,835 + IAI47_03615 0.48 -0.0
752,835 + IAI47_03615 0.48 +0.2
752,836 - IAI47_03615 0.48 -0.3
752,836 - IAI47_03615 0.48 -1.5
752,836 - IAI47_03615 0.48 +1.6
752,859 + IAI47_03615 0.50 +1.6
752,859 + IAI47_03615 0.50 -1.0
752,859 + IAI47_03615 0.50 +0.4
752,859 + IAI47_03615 0.50 -0.5
752,860 - IAI47_03615 0.50 +3.3
752,925 + IAI47_03615 0.57 -0.2
752,948 + IAI47_03615 0.60 -0.9
752,949 - IAI47_03615 0.60 -2.4
752,949 - IAI47_03615 0.60 +0.2
752,949 - IAI47_03615 0.60 +0.2
752,949 - IAI47_03615 0.60 +1.2
752,986 - IAI47_03615 0.64 -2.0
753,029 + IAI47_03615 0.68 -0.8
753,029 + IAI47_03615 0.68 -0.1
753,029 + IAI47_03615 0.68 +1.4
753,030 - IAI47_03615 0.68 +1.0
753,030 - IAI47_03615 0.68 -0.9
753,038 + IAI47_03615 0.69 +0.5
753,038 + IAI47_03615 0.69 +0.2
753,038 + IAI47_03615 0.69 +3.1
753,039 - IAI47_03615 0.69 -2.0
753,039 - IAI47_03615 0.69 -1.3
753,039 - IAI47_03615 0.69 +0.7
753,219 - IAI47_03615 0.88 +0.3
753,219 - IAI47_03615 0.88 -1.9
753,279 + -2.0
753,283 - +2.0

Or see this region's nucleotide sequence