Experiment: A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3452 and Ga0059261_3453 are separated by 63 nucleotides Ga0059261_3453 and Ga0059261_3454 are separated by 350 nucleotides Ga0059261_3454 and Ga0059261_3455 overlap by 4 nucleotides
Ga0059261_3452: Ga0059261_3452 - Cysteine synthase, at 3,576,416 to 3,577,408
_3452
Ga0059261_3453: Ga0059261_3453 - hypothetical protein, at 3,577,472 to 3,577,777
_3453
Ga0059261_3454: Ga0059261_3454 - Uncharacterized protein conserved in bacteria, at 3,578,128 to 3,578,637
_3454
Ga0059261_3455: Ga0059261_3455 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 3,578,634 to 3,579,584
_3455
Position (kb)
3577
3578 Strain fitness (log2 ratio)
-1
0
1 at 3576.506 kb on + strand at 3576.506 kb on + strand at 3576.507 kb on - strand at 3576.507 kb on - strand at 3576.507 kb on - strand at 3576.862 kb on + strand at 3577.055 kb on + strand, within Ga0059261_3452 at 3577.055 kb on + strand, within Ga0059261_3452 at 3577.055 kb on + strand, within Ga0059261_3452 at 3577.055 kb on + strand, within Ga0059261_3452 at 3577.058 kb on + strand at 3577.123 kb on + strand at 3577.346 kb on + strand at 3577.347 kb on - strand at 3577.347 kb on - strand at 3577.417 kb on + strand at 3577.417 kb on + strand at 3577.452 kb on + strand at 3577.452 kb on + strand at 3577.757 kb on + strand at 3577.758 kb on - strand at 3577.890 kb on + strand at 3577.890 kb on + strand at 3577.890 kb on + strand at 3577.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.02 mg/ml remove 3,576,506 + +0.0 3,576,506 + -1.3 3,576,507 - +0.0 3,576,507 - -1.6 3,576,507 - -0.3 3,576,862 + +0.0 3,577,055 + Ga0059261_3452 0.64 -1.0 3,577,055 + Ga0059261_3452 0.64 +0.0 3,577,055 + Ga0059261_3452 0.64 -1.6 3,577,055 + Ga0059261_3452 0.64 -0.7 3,577,058 + +0.4 3,577,123 + +0.0 3,577,346 + -0.5 3,577,347 - -0.1 3,577,347 - +0.2 3,577,417 + +0.0 3,577,417 + +1.2 3,577,452 + +0.2 3,577,452 + +0.3 3,577,757 + +0.4 3,577,758 - +0.8 3,577,890 + +1.6 3,577,890 + -0.4 3,577,890 + +1.0 3,577,922 - -0.1
Or see this region's nucleotide sequence