Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1797

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1796 and Ga0059261_1797 are separated by 142 nucleotidesGa0059261_1797 and Ga0059261_1798 overlap by 1 nucleotidesGa0059261_1798 and Ga0059261_1799 overlap by 4 nucleotides Ga0059261_1796: Ga0059261_1796 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 1,906,314 to 1,907,114 _1796 Ga0059261_1797: Ga0059261_1797 - glutamate synthase small subunit family protein, proteobacterial, at 1,907,257 to 1,908,723 _1797 Ga0059261_1798: Ga0059261_1798 - Uncharacterized protein conserved in bacteria (DUF2059), at 1,908,723 to 1,909,355 _1798 Ga0059261_1799: Ga0059261_1799 - Uncharacterized protein conserved in bacteria (DUF2059), at 1,909,352 to 1,909,939 _1799 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1907.196 kb on - strandat 1907.362 kb on + strandat 1907.362 kb on + strandat 1907.363 kb on - strandat 1907.363 kb on - strandat 1907.363 kb on - strandat 1907.363 kb on - strandat 1907.363 kb on - strandat 1907.419 kb on + strand, within Ga0059261_1797at 1907.420 kb on - strand, within Ga0059261_1797at 1907.420 kb on - strand, within Ga0059261_1797at 1907.451 kb on + strand, within Ga0059261_1797at 1907.452 kb on - strand, within Ga0059261_1797at 1907.452 kb on - strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.500 kb on + strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strand, within Ga0059261_1797at 1907.501 kb on - strandat 1907.752 kb on + strand, within Ga0059261_1797at 1907.753 kb on - strand, within Ga0059261_1797at 1907.771 kb on - strand, within Ga0059261_1797at 1907.771 kb on - strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.785 kb on + strand, within Ga0059261_1797at 1907.786 kb on - strand, within Ga0059261_1797at 1907.786 kb on - strand, within Ga0059261_1797at 1907.786 kb on - strand, within Ga0059261_1797at 1907.786 kb on - strand, within Ga0059261_1797at 1907.821 kb on + strand, within Ga0059261_1797at 1907.821 kb on + strand, within Ga0059261_1797at 1907.821 kb on + strand, within Ga0059261_1797at 1907.822 kb on - strand, within Ga0059261_1797at 1907.822 kb on - strand, within Ga0059261_1797at 1907.822 kb on - strand, within Ga0059261_1797at 1907.986 kb on + strand, within Ga0059261_1797at 1907.987 kb on - strand, within Ga0059261_1797at 1907.987 kb on - strand, within Ga0059261_1797at 1907.987 kb on - strand, within Ga0059261_1797at 1907.987 kb on - strand, within Ga0059261_1797at 1908.049 kb on + strand, within Ga0059261_1797at 1908.050 kb on - strand, within Ga0059261_1797at 1908.218 kb on - strand, within Ga0059261_1797at 1908.218 kb on - strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.472 kb on + strand, within Ga0059261_1797at 1908.473 kb on - strand, within Ga0059261_1797at 1908.473 kb on - strand, within Ga0059261_1797at 1908.473 kb on - strand, within Ga0059261_1797at 1908.492 kb on + strand, within Ga0059261_1797at 1908.492 kb on + strand, within Ga0059261_1797at 1908.493 kb on - strand, within Ga0059261_1797at 1908.493 kb on - strand, within Ga0059261_1797at 1908.493 kb on - strand, within Ga0059261_1797at 1908.493 kb on - strand, within Ga0059261_1797at 1908.728 kb on + strandat 1908.729 kb on - strandat 1908.729 kb on - strandat 1908.729 kb on - strandat 1908.729 kb on - strandat 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.867 kb on + strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strandat 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.868 kb on - strand, within Ga0059261_1798at 1908.869 kb on + strand, within Ga0059261_1798at 1908.869 kb on + strand, within Ga0059261_1798at 1908.869 kb on + strand, within Ga0059261_1798at 1908.869 kb on + strand, within Ga0059261_1798at 1908.870 kb on - strand, within Ga0059261_1798at 1908.870 kb on - strand, within Ga0059261_1798at 1908.870 kb on - strand, within Ga0059261_1798at 1908.870 kb on - strand, within Ga0059261_1798at 1908.870 kb on - strand, within Ga0059261_1798at 1909.207 kb on - strand, within Ga0059261_1798at 1909.207 kb on - strand, within Ga0059261_1798at 1909.207 kb on - strand, within Ga0059261_1798at 1909.450 kb on + strand, within Ga0059261_1799at 1909.451 kb on - strand, within Ga0059261_1799at 1909.704 kb on - strand, within Ga0059261_1799

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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1,907,196 - +0.6
1,907,362 + -0.6
1,907,362 + -0.0
1,907,363 - +0.1
1,907,363 - +0.6
1,907,363 - +0.3
1,907,363 - +0.0
1,907,363 - -2.7
1,907,419 + Ga0059261_1797 0.11 +1.0
1,907,420 - Ga0059261_1797 0.11 +0.6
1,907,420 - Ga0059261_1797 0.11 +1.0
1,907,451 + Ga0059261_1797 0.13 -0.1
1,907,452 - Ga0059261_1797 0.13 -0.5
1,907,452 - Ga0059261_1797 0.13 -0.3
1,907,500 + Ga0059261_1797 0.17 -0.7
1,907,500 + Ga0059261_1797 0.17 -2.9
1,907,500 + Ga0059261_1797 0.17 -0.5
1,907,500 + Ga0059261_1797 0.17 -0.8
1,907,500 + Ga0059261_1797 0.17 +0.1
1,907,500 + Ga0059261_1797 0.17 -0.1
1,907,500 + Ga0059261_1797 0.17 -2.7
1,907,500 + Ga0059261_1797 0.17 -0.2
1,907,500 + Ga0059261_1797 0.17 -0.7
1,907,501 - Ga0059261_1797 0.17 -0.0
1,907,501 - Ga0059261_1797 0.17 +3.3
1,907,501 - Ga0059261_1797 0.17 -0.3
1,907,501 - Ga0059261_1797 0.17 +0.0
1,907,501 - Ga0059261_1797 0.17 -0.7
1,907,501 - Ga0059261_1797 0.17 -1.3
1,907,501 - -0.7
1,907,752 + Ga0059261_1797 0.34 -1.0
1,907,753 - Ga0059261_1797 0.34 +0.4
1,907,771 - Ga0059261_1797 0.35 +0.1
1,907,771 - Ga0059261_1797 0.35 -0.7
1,907,785 + Ga0059261_1797 0.36 +0.4
1,907,785 + Ga0059261_1797 0.36 -0.5
1,907,785 + Ga0059261_1797 0.36 +1.0
1,907,785 + Ga0059261_1797 0.36 +0.6
1,907,785 + Ga0059261_1797 0.36 -0.1
1,907,785 + Ga0059261_1797 0.36 -0.1
1,907,785 + Ga0059261_1797 0.36 +1.3
1,907,786 - Ga0059261_1797 0.36 +0.3
1,907,786 - Ga0059261_1797 0.36 +0.2
1,907,786 - Ga0059261_1797 0.36 -0.4
1,907,786 - Ga0059261_1797 0.36 -0.6
1,907,821 + Ga0059261_1797 0.38 +0.5
1,907,821 + Ga0059261_1797 0.38 +0.4
1,907,821 + Ga0059261_1797 0.38 +0.2
1,907,822 - Ga0059261_1797 0.39 +1.0
1,907,822 - Ga0059261_1797 0.39 +1.0
1,907,822 - Ga0059261_1797 0.39 +0.4
1,907,986 + Ga0059261_1797 0.50 +0.1
1,907,987 - Ga0059261_1797 0.50 +0.4
1,907,987 - Ga0059261_1797 0.50 -0.5
1,907,987 - Ga0059261_1797 0.50 +0.5
1,907,987 - Ga0059261_1797 0.50 -0.3
1,908,049 + Ga0059261_1797 0.54 -0.2
1,908,050 - Ga0059261_1797 0.54 +0.5
1,908,218 - Ga0059261_1797 0.66 +1.3
1,908,218 - Ga0059261_1797 0.66 -0.0
1,908,472 + Ga0059261_1797 0.83 +0.1
1,908,472 + Ga0059261_1797 0.83 +0.6
1,908,472 + Ga0059261_1797 0.83 +0.3
1,908,472 + Ga0059261_1797 0.83 +0.6
1,908,472 + Ga0059261_1797 0.83 -0.3
1,908,472 + Ga0059261_1797 0.83 +0.2
1,908,473 - Ga0059261_1797 0.83 -0.2
1,908,473 - Ga0059261_1797 0.83 +0.4
1,908,473 - Ga0059261_1797 0.83 -0.2
1,908,492 + Ga0059261_1797 0.84 +0.3
1,908,492 + Ga0059261_1797 0.84 -0.1
1,908,493 - Ga0059261_1797 0.84 +0.4
1,908,493 - Ga0059261_1797 0.84 -0.9
1,908,493 - Ga0059261_1797 0.84 -0.1
1,908,493 - Ga0059261_1797 0.84 +0.6
1,908,728 + +2.3
1,908,729 - +0.2
1,908,729 - -1.6
1,908,729 - +0.1
1,908,729 - -0.3
1,908,867 + Ga0059261_1798 0.23 -0.6
1,908,867 + Ga0059261_1798 0.23 +0.0
1,908,867 + Ga0059261_1798 0.23 -0.1
1,908,867 + Ga0059261_1798 0.23 -0.0
1,908,867 + Ga0059261_1798 0.23 -0.1
1,908,867 + Ga0059261_1798 0.23 +0.1
1,908,867 + Ga0059261_1798 0.23 -0.4
1,908,867 + Ga0059261_1798 0.23 +0.2
1,908,867 + Ga0059261_1798 0.23 +0.8
1,908,867 + Ga0059261_1798 0.23 +0.1
1,908,867 + Ga0059261_1798 0.23 +1.3
1,908,867 + Ga0059261_1798 0.23 +0.8
1,908,867 + Ga0059261_1798 0.23 -0.0
1,908,867 + Ga0059261_1798 0.23 +1.0
1,908,867 + Ga0059261_1798 0.23 -0.2
1,908,867 + Ga0059261_1798 0.23 -0.1
1,908,867 + Ga0059261_1798 0.23 -0.3
1,908,867 + Ga0059261_1798 0.23 +0.1
1,908,868 - Ga0059261_1798 0.23 +0.0
1,908,868 - Ga0059261_1798 0.23 -0.5
1,908,868 - Ga0059261_1798 0.23 +0.4
1,908,868 - Ga0059261_1798 0.23 +1.3
1,908,868 - Ga0059261_1798 0.23 +0.2
1,908,868 - Ga0059261_1798 0.23 +0.0
1,908,868 - Ga0059261_1798 0.23 -0.9
1,908,868 - Ga0059261_1798 0.23 +0.5
1,908,868 - Ga0059261_1798 0.23 -1.3
1,908,868 - Ga0059261_1798 0.23 -0.2
1,908,868 - +1.9
1,908,868 - Ga0059261_1798 0.23 -1.7
1,908,868 - Ga0059261_1798 0.23 -0.3
1,908,868 - Ga0059261_1798 0.23 -0.5
1,908,868 - Ga0059261_1798 0.23 +0.1
1,908,869 + Ga0059261_1798 0.23 +1.9
1,908,869 + Ga0059261_1798 0.23 -0.0
1,908,869 + Ga0059261_1798 0.23 +0.7
1,908,869 + Ga0059261_1798 0.23 -0.2
1,908,870 - Ga0059261_1798 0.23 +0.0
1,908,870 - Ga0059261_1798 0.23 +0.4
1,908,870 - Ga0059261_1798 0.23 +0.9
1,908,870 - Ga0059261_1798 0.23 +0.3
1,908,870 - Ga0059261_1798 0.23 -0.7
1,909,207 - Ga0059261_1798 0.76 +1.6
1,909,207 - Ga0059261_1798 0.76 +0.4
1,909,207 - Ga0059261_1798 0.76 +0.1
1,909,450 + Ga0059261_1799 0.17 +0.1
1,909,451 - Ga0059261_1799 0.17 +0.4
1,909,704 - Ga0059261_1799 0.60 -0.0

Or see this region's nucleotide sequence