Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0815

Experiment: A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0813 and Ga0059261_0814 overlap by 1 nucleotidesGa0059261_0814 and Ga0059261_0815 are separated by 7 nucleotidesGa0059261_0815 and Ga0059261_0816 are separated by 161 nucleotidesGa0059261_0816 and Ga0059261_0817 are separated by 43 nucleotides Ga0059261_0813: Ga0059261_0813 - hypothetical protein, at 855,433 to 855,915 _0813 Ga0059261_0814: Ga0059261_0814 - hypothetical protein, at 855,915 to 856,631 _0814 Ga0059261_0815: Ga0059261_0815 - Uncharacterized protein involved in tellurite resistance, at 856,639 to 857,847 _0815 Ga0059261_0816: Ga0059261_0816 - hypothetical protein, at 858,009 to 858,179 _0816 Ga0059261_0817: Ga0059261_0817 - GTP-binding protein TypA/BipA, at 858,223 to 860,037 _0817 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 855.713 kb on + strand, within Ga0059261_0813at 855.713 kb on + strand, within Ga0059261_0813at 855.714 kb on - strand, within Ga0059261_0813at 855.714 kb on - strandat 855.729 kb on + strand, within Ga0059261_0813at 855.730 kb on - strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.764 kb on + strand, within Ga0059261_0813at 855.765 kb on - strand, within Ga0059261_0813at 855.842 kb on + strand, within Ga0059261_0813at 855.842 kb on + strandat 855.946 kb on + strandat 855.946 kb on + strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.947 kb on - strandat 855.961 kb on + strandat 856.017 kb on - strand, within Ga0059261_0814at 856.121 kb on - strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.413 kb on + strand, within Ga0059261_0814at 856.414 kb on - strand, within Ga0059261_0814at 856.414 kb on - strand, within Ga0059261_0814at 856.564 kb on + strandat 856.565 kb on - strandat 856.640 kb on + strandat 856.641 kb on - strandat 856.713 kb on + strandat 856.713 kb on + strandat 856.714 kb on - strandat 856.715 kb on + strandat 856.715 kb on + strandat 856.715 kb on + strandat 856.715 kb on + strandat 856.715 kb on + strandat 856.715 kb on + strandat 856.716 kb on - strandat 856.716 kb on - strandat 856.716 kb on - strandat 856.767 kb on + strand, within Ga0059261_0815at 856.767 kb on + strand, within Ga0059261_0815at 856.767 kb on + strand, within Ga0059261_0815at 856.767 kb on + strand, within Ga0059261_0815at 856.768 kb on - strand, within Ga0059261_0815at 856.768 kb on - strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.817 kb on + strand, within Ga0059261_0815at 856.818 kb on - strand, within Ga0059261_0815at 856.818 kb on - strand, within Ga0059261_0815at 856.818 kb on - strand, within Ga0059261_0815at 857.079 kb on - strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.102 kb on + strand, within Ga0059261_0815at 857.158 kb on - strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.159 kb on + strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.160 kb on - strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strand, within Ga0059261_0815at 857.261 kb on + strandat 857.261 kb on + strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.262 kb on - strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.400 kb on + strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.401 kb on - strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.402 kb on + strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.403 kb on - strand, within Ga0059261_0815at 857.414 kb on + strand, within Ga0059261_0815at 857.415 kb on - strand, within Ga0059261_0815at 857.908 kb on - strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.932 kb on + strandat 857.933 kb on - strandat 857.933 kb on - strandat 857.982 kb on + strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.983 kb on - strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.987 kb on + strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.988 kb on - strandat 857.997 kb on - strandat 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.152 kb on - strand, within Ga0059261_0816at 858.477 kb on + strand, within Ga0059261_0817at 858.478 kb on - strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817at 858.706 kb on + strand, within Ga0059261_0817

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.02 mg/ml
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855,713 + Ga0059261_0813 0.58 +0.1
855,713 + Ga0059261_0813 0.58 -0.4
855,714 - Ga0059261_0813 0.58 +0.1
855,714 - +1.0
855,729 + Ga0059261_0813 0.61 +0.1
855,730 - Ga0059261_0813 0.61 -1.0
855,764 + Ga0059261_0813 0.69 -0.0
855,764 + Ga0059261_0813 0.69 -1.3
855,764 + Ga0059261_0813 0.69 -0.2
855,765 - Ga0059261_0813 0.69 +0.0
855,842 + Ga0059261_0813 0.85 -0.0
855,842 + +2.2
855,946 + -1.0
855,946 + -0.2
855,947 - -0.4
855,947 - +0.1
855,947 - -0.0
855,947 - -0.4
855,961 + -1.0
856,017 - Ga0059261_0814 0.14 -0.4
856,121 - Ga0059261_0814 0.29 -0.1
856,413 + Ga0059261_0814 0.69 +0.4
856,413 + Ga0059261_0814 0.69 +0.5
856,413 + Ga0059261_0814 0.69 -0.2
856,414 - Ga0059261_0814 0.70 +0.1
856,414 - Ga0059261_0814 0.70 -0.9
856,564 + -1.9
856,565 - -0.2
856,640 + -0.1
856,641 - -0.6
856,713 + -0.3
856,713 + +0.8
856,714 - -1.3
856,715 + -2.5
856,715 + -0.6
856,715 + +0.2
856,715 + -0.3
856,715 + +1.0
856,715 + +0.4
856,716 - +0.3
856,716 - -0.2
856,716 - -0.1
856,767 + Ga0059261_0815 0.11 -0.7
856,767 + Ga0059261_0815 0.11 -1.2
856,767 + Ga0059261_0815 0.11 -0.2
856,767 + Ga0059261_0815 0.11 +0.2
856,768 - Ga0059261_0815 0.11 -1.1
856,768 - Ga0059261_0815 0.11 -1.3
856,817 + Ga0059261_0815 0.15 -0.8
856,817 + Ga0059261_0815 0.15 -0.7
856,817 + Ga0059261_0815 0.15 +1.0
856,817 + Ga0059261_0815 0.15 -0.7
856,817 + Ga0059261_0815 0.15 -1.7
856,817 + Ga0059261_0815 0.15 -1.3
856,818 - Ga0059261_0815 0.15 -0.5
856,818 - Ga0059261_0815 0.15 -0.0
856,818 - Ga0059261_0815 0.15 -0.3
857,079 - Ga0059261_0815 0.36 -0.1
857,102 + Ga0059261_0815 0.38 -1.3
857,102 + Ga0059261_0815 0.38 -2.5
857,102 + Ga0059261_0815 0.38 -0.2
857,158 - Ga0059261_0815 0.43 -0.6
857,159 + Ga0059261_0815 0.43 -1.3
857,159 + Ga0059261_0815 0.43 -0.6
857,159 + Ga0059261_0815 0.43 -0.9
857,159 + Ga0059261_0815 0.43 -1.3
857,159 + Ga0059261_0815 0.43 -1.1
857,159 + Ga0059261_0815 0.43 -0.2
857,159 + Ga0059261_0815 0.43 -1.4
857,160 - Ga0059261_0815 0.43 -0.9
857,160 - Ga0059261_0815 0.43 -1.4
857,160 - Ga0059261_0815 0.43 -0.7
857,160 - Ga0059261_0815 0.43 -0.9
857,160 - Ga0059261_0815 0.43 -0.9
857,160 - Ga0059261_0815 0.43 -0.7
857,160 - Ga0059261_0815 0.43 -2.7
857,160 - Ga0059261_0815 0.43 +0.1
857,160 - Ga0059261_0815 0.43 -0.8
857,261 + Ga0059261_0815 0.51 -1.8
857,261 + Ga0059261_0815 0.51 -1.2
857,261 + Ga0059261_0815 0.51 -0.8
857,261 + Ga0059261_0815 0.51 -1.1
857,261 + Ga0059261_0815 0.51 -0.3
857,261 + Ga0059261_0815 0.51 -0.4
857,261 + -0.0
857,261 + Ga0059261_0815 0.51 -2.9
857,262 - Ga0059261_0815 0.52 -1.7
857,262 - Ga0059261_0815 0.52 -0.8
857,262 - Ga0059261_0815 0.52 -1.5
857,262 - Ga0059261_0815 0.52 -2.3
857,262 - Ga0059261_0815 0.52 -0.4
857,262 - Ga0059261_0815 0.52 -1.8
857,262 - Ga0059261_0815 0.52 -1.3
857,262 - Ga0059261_0815 0.52 +0.1
857,262 - Ga0059261_0815 0.52 -0.4
857,262 - Ga0059261_0815 0.52 -0.2
857,400 + Ga0059261_0815 0.63 +0.4
857,400 + Ga0059261_0815 0.63 -1.6
857,400 + Ga0059261_0815 0.63 -1.2
857,400 + Ga0059261_0815 0.63 -0.4
857,400 + Ga0059261_0815 0.63 -0.2
857,400 + Ga0059261_0815 0.63 -1.4
857,400 + Ga0059261_0815 0.63 -1.4
857,400 + Ga0059261_0815 0.63 -0.3
857,400 + Ga0059261_0815 0.63 -0.8
857,400 + Ga0059261_0815 0.63 -0.6
857,400 + Ga0059261_0815 0.63 +0.0
857,401 - Ga0059261_0815 0.63 -0.9
857,401 - Ga0059261_0815 0.63 -0.2
857,401 - Ga0059261_0815 0.63 -1.3
857,401 - Ga0059261_0815 0.63 -2.8
857,401 - Ga0059261_0815 0.63 -1.3
857,401 - Ga0059261_0815 0.63 -1.6
857,401 - Ga0059261_0815 0.63 -2.0
857,402 + Ga0059261_0815 0.63 -2.5
857,402 + Ga0059261_0815 0.63 -2.0
857,402 + Ga0059261_0815 0.63 -1.3
857,402 + Ga0059261_0815 0.63 -0.4
857,402 + Ga0059261_0815 0.63 -0.5
857,402 + Ga0059261_0815 0.63 -0.1
857,403 - Ga0059261_0815 0.63 -1.3
857,403 - Ga0059261_0815 0.63 -0.0
857,403 - Ga0059261_0815 0.63 -0.7
857,403 - Ga0059261_0815 0.63 -1.7
857,403 - Ga0059261_0815 0.63 -0.0
857,403 - Ga0059261_0815 0.63 -0.6
857,403 - Ga0059261_0815 0.63 -0.8
857,403 - Ga0059261_0815 0.63 -0.6
857,403 - Ga0059261_0815 0.63 -1.0
857,403 - Ga0059261_0815 0.63 -0.6
857,414 + Ga0059261_0815 0.64 -0.8
857,415 - Ga0059261_0815 0.64 -1.6
857,908 - +0.1
857,932 + -0.4
857,932 + -0.2
857,932 + +0.4
857,932 + -0.1
857,933 - +0.1
857,933 - +0.4
857,982 + -0.4
857,983 - +0.6
857,983 - -1.9
857,983 - +0.3
857,983 - -1.0
857,983 - +0.4
857,983 - +0.2
857,983 - -0.4
857,983 - +0.9
857,983 - -0.0
857,987 + +0.1
857,987 + -0.0
857,987 + +0.3
857,988 - -0.3
857,988 - +0.7
857,988 - +2.0
857,988 - +0.0
857,997 - +0.7
858,152 - Ga0059261_0816 0.84 +0.6
858,152 - Ga0059261_0816 0.84 +0.2
858,152 - Ga0059261_0816 0.84 -0.5
858,477 + Ga0059261_0817 0.14 +1.0
858,478 - Ga0059261_0817 0.14 +1.4
858,706 + Ga0059261_0817 0.27 +1.2
858,706 + Ga0059261_0817 0.27 +1.2

Or see this region's nucleotide sequence