Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24840 and BWI76_RS24845 are separated by 50 nucleotides BWI76_RS24845 and BWI76_RS24850 are separated by 10 nucleotides
BWI76_RS24840: BWI76_RS24840 - galactarate dehydratase, at 5,176,079 to 5,177,650
_RS24840
BWI76_RS24845: BWI76_RS24845 - PfkB domain-containing protein, at 5,177,701 to 5,178,648
_RS24845
BWI76_RS24850: BWI76_RS24850 - DeoR family transcriptional regulator, at 5,178,659 to 5,179,489
_RS24850
Position (kb) 5177
5178
5179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5176.755 kb on - strand, within BWI76_RS24840 at 5176.841 kb on + strand, within BWI76_RS24840 at 5177.005 kb on - strand, within BWI76_RS24840 at 5177.189 kb on - strand, within BWI76_RS24840 at 5177.254 kb on - strand at 5177.277 kb on + strand, within BWI76_RS24840 at 5177.475 kb on + strand, within BWI76_RS24840 at 5177.543 kb on - strand at 5177.626 kb on + strand at 5177.632 kb on - strand at 5177.634 kb on - strand at 5177.634 kb on - strand at 5177.639 kb on + strand at 5177.831 kb on + strand, within BWI76_RS24845 at 5177.859 kb on - strand, within BWI76_RS24845 at 5177.935 kb on + strand, within BWI76_RS24845 at 5178.036 kb on + strand, within BWI76_RS24845 at 5178.221 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.272 kb on - strand, within BWI76_RS24845 at 5178.288 kb on + strand, within BWI76_RS24845 at 5178.316 kb on + strand at 5178.345 kb on + strand, within BWI76_RS24845 at 5178.409 kb on - strand, within BWI76_RS24845 at 5178.656 kb on + strand at 5178.656 kb on + strand at 5178.775 kb on + strand, within BWI76_RS24850 at 5178.932 kb on + strand, within BWI76_RS24850 at 5178.972 kb on - strand, within BWI76_RS24850 at 5179.031 kb on + strand, within BWI76_RS24850 at 5179.073 kb on + strand, within BWI76_RS24850 at 5179.298 kb on + strand, within BWI76_RS24850 at 5179.299 kb on + strand, within BWI76_RS24850 at 5179.329 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,176,755 - BWI76_RS24840 0.43 +0.6 5,176,841 + BWI76_RS24840 0.48 -0.1 5,177,005 - BWI76_RS24840 0.59 +0.3 5,177,189 - BWI76_RS24840 0.71 +0.3 5,177,254 - +2.4 5,177,277 + BWI76_RS24840 0.76 +0.0 5,177,475 + BWI76_RS24840 0.89 -0.2 5,177,543 - -0.1 5,177,626 + -1.0 5,177,632 - +0.6 5,177,634 - -0.2 5,177,634 - -0.5 5,177,639 + -0.9 5,177,831 + BWI76_RS24845 0.14 -1.1 5,177,859 - BWI76_RS24845 0.17 -1.0 5,177,935 + BWI76_RS24845 0.25 +1.4 5,178,036 + BWI76_RS24845 0.35 -0.6 5,178,221 + BWI76_RS24845 0.55 +0.6 5,178,264 + BWI76_RS24845 0.59 -0.5 5,178,264 + BWI76_RS24845 0.59 +0.8 5,178,272 - BWI76_RS24845 0.60 +0.7 5,178,288 + BWI76_RS24845 0.62 +0.6 5,178,316 + +2.4 5,178,345 + BWI76_RS24845 0.68 +2.4 5,178,409 - BWI76_RS24845 0.75 -2.5 5,178,656 + +0.4 5,178,656 + -0.4 5,178,775 + BWI76_RS24850 0.14 -2.7 5,178,932 + BWI76_RS24850 0.33 -0.8 5,178,972 - BWI76_RS24850 0.38 -0.6 5,179,031 + BWI76_RS24850 0.45 -0.4 5,179,073 + BWI76_RS24850 0.50 -1.8 5,179,298 + BWI76_RS24850 0.77 -1.5 5,179,299 + BWI76_RS24850 0.77 -1.4 5,179,329 + BWI76_RS24850 0.81 -1.2 5,179,352 + BWI76_RS24850 0.83 -1.1 5,179,352 + BWI76_RS24850 0.83 -0.6 5,179,493 + -1.5
Or see this region's nucleotide sequence