Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22875

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22870 and BWI76_RS22875 are separated by 536 nucleotidesBWI76_RS22875 and BWI76_RS22880 are separated by 53 nucleotides BWI76_RS22870: BWI76_RS22870 - LOG family protein, at 4,770,874 to 4,772,241 _RS22870 BWI76_RS22875: BWI76_RS22875 - serine transporter, at 4,772,778 to 4,774,067 _RS22875 BWI76_RS22880: BWI76_RS22880 - L-serine ammonia-lyase, at 4,774,121 to 4,775,488 _RS22880 Position (kb) 4772 4773 4774 4775Strain fitness (log2 ratio) -1 0 1 2at 4771.784 kb on + strand, within BWI76_RS22870at 4771.916 kb on - strand, within BWI76_RS22870at 4771.989 kb on + strand, within BWI76_RS22870at 4772.059 kb on - strand, within BWI76_RS22870at 4772.103 kb on - strand, within BWI76_RS22870at 4772.186 kb on + strandat 4772.217 kb on - strandat 4772.286 kb on - strandat 4772.527 kb on - strandat 4772.785 kb on - strandat 4772.889 kb on + strandat 4772.971 kb on + strand, within BWI76_RS22875at 4773.154 kb on + strand, within BWI76_RS22875at 4773.274 kb on + strand, within BWI76_RS22875at 4773.371 kb on - strand, within BWI76_RS22875at 4773.434 kb on + strand, within BWI76_RS22875at 4773.515 kb on - strand, within BWI76_RS22875at 4773.542 kb on + strand, within BWI76_RS22875at 4773.624 kb on + strand, within BWI76_RS22875at 4773.632 kb on - strand, within BWI76_RS22875at 4773.886 kb on + strand, within BWI76_RS22875at 4773.947 kb on + strandat 4774.100 kb on + strandat 4774.168 kb on + strandat 4774.223 kb on - strandat 4774.382 kb on - strand, within BWI76_RS22880at 4774.501 kb on + strand, within BWI76_RS22880

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,771,784 + BWI76_RS22870 0.67 -0.9
4,771,916 - BWI76_RS22870 0.76 -0.3
4,771,989 + BWI76_RS22870 0.82 -0.6
4,772,059 - BWI76_RS22870 0.87 -0.9
4,772,103 - BWI76_RS22870 0.90 -0.4
4,772,186 + +0.1
4,772,217 - +2.4
4,772,286 - -0.4
4,772,527 - +1.8
4,772,785 - -0.8
4,772,889 + +0.3
4,772,971 + BWI76_RS22875 0.15 -0.0
4,773,154 + BWI76_RS22875 0.29 -0.3
4,773,274 + BWI76_RS22875 0.38 +0.7
4,773,371 - BWI76_RS22875 0.46 -0.2
4,773,434 + BWI76_RS22875 0.51 +0.4
4,773,515 - BWI76_RS22875 0.57 +0.1
4,773,542 + BWI76_RS22875 0.59 +0.4
4,773,624 + BWI76_RS22875 0.66 +0.6
4,773,632 - BWI76_RS22875 0.66 -0.4
4,773,886 + BWI76_RS22875 0.86 +1.2
4,773,947 + +0.4
4,774,100 + +0.1
4,774,168 + +0.1
4,774,223 - -0.4
4,774,382 - BWI76_RS22880 0.19 +0.1
4,774,501 + BWI76_RS22880 0.28 +0.2

Or see this region's nucleotide sequence