Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20675 and BWI76_RS20680 are separated by 45 nucleotides BWI76_RS20680 and BWI76_RS20685 overlap by 4 nucleotides BWI76_RS20685 and BWI76_RS20690 are separated by 118 nucleotides
BWI76_RS20675: BWI76_RS20675 - GMP synthase, at 4,325,683 to 4,326,390
_RS20675
BWI76_RS20680: BWI76_RS20680 - hypothetical protein, at 4,326,436 to 4,326,840
_RS20680
BWI76_RS20685: BWI76_RS20685 - cysteine synthase B, at 4,326,837 to 4,327,748
_RS20685
BWI76_RS20690: BWI76_RS20690 - sulfate ABC transporter ATP-binding protein, at 4,327,867 to 4,328,961
_RS20690
Position (kb) 4326
4327
4328 Strain fitness (log2 ratio) -2
-1
0
1 at 4325.864 kb on + strand, within BWI76_RS20675 at 4325.904 kb on + strand, within BWI76_RS20675 at 4326.249 kb on + strand, within BWI76_RS20675 at 4326.249 kb on + strand at 4326.258 kb on - strand, within BWI76_RS20675 at 4326.315 kb on + strand, within BWI76_RS20675 at 4327.165 kb on - strand, within BWI76_RS20685 at 4327.801 kb on - strand at 4327.822 kb on - strand at 4327.979 kb on + strand, within BWI76_RS20690 at 4328.069 kb on + strand, within BWI76_RS20690 at 4328.214 kb on - strand, within BWI76_RS20690 at 4328.633 kb on + strand, within BWI76_RS20690
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 4,325,864 + BWI76_RS20675 0.26 +0.1 4,325,904 + BWI76_RS20675 0.31 +0.5 4,326,249 + BWI76_RS20675 0.80 -0.7 4,326,249 + -0.2 4,326,258 - BWI76_RS20675 0.81 +0.8 4,326,315 + BWI76_RS20675 0.89 -1.8 4,327,165 - BWI76_RS20685 0.36 +0.3 4,327,801 - -0.4 4,327,822 - +0.5 4,327,979 + BWI76_RS20690 0.10 -0.9 4,328,069 + BWI76_RS20690 0.18 -1.4 4,328,214 - BWI76_RS20690 0.32 -1.1 4,328,633 + BWI76_RS20690 0.70 -1.4
Or see this region's nucleotide sequence