Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19875

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19870 and BWI76_RS19875 are separated by 279 nucleotidesBWI76_RS19875 and BWI76_RS19880 overlap by 38 nucleotides BWI76_RS19870: BWI76_RS19870 - malate:quinone oxidoreductase, at 4,153,664 to 4,155,298 _RS19870 BWI76_RS19875: BWI76_RS19875 - sulfate transporter, at 4,155,578 to 4,156,825 _RS19875 BWI76_RS19880: BWI76_RS19880 - magnesium transporter, at 4,156,788 to 4,158,224 _RS19880 Position (kb) 4155 4156 4157Strain fitness (log2 ratio) -1 0 1at 4154.588 kb on + strandat 4154.888 kb on + strand, within BWI76_RS19870at 4155.036 kb on + strand, within BWI76_RS19870at 4155.053 kb on - strand, within BWI76_RS19870at 4155.273 kb on - strandat 4155.650 kb on + strandat 4156.769 kb on - strandat 4156.862 kb on + strandat 4156.943 kb on + strand, within BWI76_RS19880at 4157.216 kb on + strand, within BWI76_RS19880at 4157.562 kb on - strand, within BWI76_RS19880at 4157.627 kb on - strand, within BWI76_RS19880

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,154,588 + -0.3
4,154,888 + BWI76_RS19870 0.75 -0.8
4,155,036 + BWI76_RS19870 0.84 -0.4
4,155,053 - BWI76_RS19870 0.85 -0.1
4,155,273 - -0.7
4,155,650 + -0.5
4,156,769 - -0.1
4,156,862 + +0.0
4,156,943 + BWI76_RS19880 0.11 +0.0
4,157,216 + BWI76_RS19880 0.30 -1.0
4,157,562 - BWI76_RS19880 0.54 +0.2
4,157,627 - BWI76_RS19880 0.58 +1.2

Or see this region's nucleotide sequence