Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18360

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18350 and BWI76_RS18355 overlap by 4 nucleotidesBWI76_RS18355 and BWI76_RS18360 are separated by 15 nucleotidesBWI76_RS18360 and BWI76_RS18365 are separated by 95 nucleotides BWI76_RS18350: BWI76_RS18350 - L-cystine ABC transporter ATP-binding protein YecC, at 3,809,827 to 3,810,579 _RS18350 BWI76_RS18355: BWI76_RS18355 - amino acid ABC transporter permease, at 3,810,576 to 3,811,244 _RS18355 BWI76_RS18360: BWI76_RS18360 - aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein, at 3,811,260 to 3,812,246 _RS18360 BWI76_RS18365: BWI76_RS18365 - cystine ABC transporter substrate-binding protein, at 3,812,342 to 3,813,142 _RS18365 Position (kb) 3811 3812 3813Strain fitness (log2 ratio) -1 0 1at 3810.276 kb on + strand, within BWI76_RS18350at 3810.324 kb on - strand, within BWI76_RS18350at 3810.357 kb on + strand, within BWI76_RS18350at 3810.365 kb on - strand, within BWI76_RS18350at 3810.437 kb on - strand, within BWI76_RS18350at 3810.518 kb on - strandat 3810.600 kb on + strandat 3810.724 kb on + strand, within BWI76_RS18355at 3810.737 kb on - strand, within BWI76_RS18355at 3811.005 kb on - strand, within BWI76_RS18355at 3811.173 kb on - strand, within BWI76_RS18355at 3811.226 kb on + strandat 3811.234 kb on - strandat 3811.286 kb on + strandat 3811.486 kb on + strand, within BWI76_RS18360at 3811.800 kb on - strand, within BWI76_RS18360at 3811.968 kb on - strand, within BWI76_RS18360at 3812.259 kb on - strandat 3812.430 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.451 kb on + strand, within BWI76_RS18365at 3812.459 kb on - strand, within BWI76_RS18365at 3812.777 kb on - strand, within BWI76_RS18365at 3812.997 kb on - strand, within BWI76_RS18365at 3813.035 kb on - strand, within BWI76_RS18365at 3813.130 kb on - strandat 3813.183 kb on - strandat 3813.184 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,810,276 + BWI76_RS18350 0.60 -1.1
3,810,324 - BWI76_RS18350 0.66 -0.0
3,810,357 + BWI76_RS18350 0.70 +0.3
3,810,365 - BWI76_RS18350 0.71 -1.0
3,810,437 - BWI76_RS18350 0.81 -0.2
3,810,518 - -0.1
3,810,600 + +0.4
3,810,724 + BWI76_RS18355 0.22 -1.4
3,810,737 - BWI76_RS18355 0.24 -0.3
3,811,005 - BWI76_RS18355 0.64 -0.7
3,811,173 - BWI76_RS18355 0.89 +0.1
3,811,226 + -1.2
3,811,234 - +0.7
3,811,286 + -0.2
3,811,486 + BWI76_RS18360 0.23 +0.8
3,811,800 - BWI76_RS18360 0.55 +0.7
3,811,968 - BWI76_RS18360 0.72 +1.0
3,812,259 - +0.1
3,812,430 + BWI76_RS18365 0.11 -0.1
3,812,451 + BWI76_RS18365 0.14 -0.1
3,812,451 + BWI76_RS18365 0.14 +0.0
3,812,459 - BWI76_RS18365 0.15 +1.2
3,812,777 - BWI76_RS18365 0.54 +0.3
3,812,997 - BWI76_RS18365 0.82 +0.5
3,813,035 - BWI76_RS18365 0.87 +0.2
3,813,130 - -0.1
3,813,183 - +0.5
3,813,184 + +0.7

Or see this region's nucleotide sequence