Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17735

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17730 and BWI76_RS17735 are separated by 12 nucleotidesBWI76_RS17735 and BWI76_RS17740 are separated by 321 nucleotides BWI76_RS17730: BWI76_RS17730 - alanine racemase, at 3,686,485 to 3,687,555 _RS17730 BWI76_RS17735: BWI76_RS17735 - D-amino acid dehydrogenase small subunit, at 3,687,568 to 3,688,866 _RS17735 BWI76_RS17740: BWI76_RS17740 - SpoVR family protein, at 3,689,188 to 3,690,720 _RS17740 Position (kb) 3687 3688 3689Strain fitness (log2 ratio) -1 0 1 2at 3687.476 kb on - strandat 3687.553 kb on + strandat 3688.130 kb on + strand, within BWI76_RS17735at 3688.330 kb on - strand, within BWI76_RS17735at 3688.522 kb on + strand, within BWI76_RS17735at 3688.677 kb on + strand, within BWI76_RS17735at 3688.750 kb on + strandat 3688.800 kb on - strandat 3688.951 kb on - strandat 3688.978 kb on + strandat 3688.991 kb on - strandat 3689.053 kb on - strandat 3689.127 kb on + strandat 3689.232 kb on + strandat 3689.260 kb on + strandat 3689.267 kb on - strandat 3689.274 kb on + strandat 3689.492 kb on - strand, within BWI76_RS17740at 3689.556 kb on - strand, within BWI76_RS17740at 3689.689 kb on - strand, within BWI76_RS17740at 3689.753 kb on - strand, within BWI76_RS17740at 3689.753 kb on - strand, within BWI76_RS17740at 3689.823 kb on + strand, within BWI76_RS17740

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,687,476 - +2.3
3,687,553 + -0.6
3,688,130 + BWI76_RS17735 0.43 -1.2
3,688,330 - BWI76_RS17735 0.59 -1.0
3,688,522 + BWI76_RS17735 0.73 -1.2
3,688,677 + BWI76_RS17735 0.85 +0.2
3,688,750 + +0.5
3,688,800 - -0.1
3,688,951 - +0.5
3,688,978 + +0.3
3,688,991 - +0.0
3,689,053 - +0.1
3,689,127 + -0.4
3,689,232 + -0.6
3,689,260 + -0.0
3,689,267 - -0.5
3,689,274 + -0.9
3,689,492 - BWI76_RS17740 0.20 -1.0
3,689,556 - BWI76_RS17740 0.24 -1.0
3,689,689 - BWI76_RS17740 0.33 -0.5
3,689,753 - BWI76_RS17740 0.37 +0.2
3,689,753 - BWI76_RS17740 0.37 -0.4
3,689,823 + BWI76_RS17740 0.41 -0.6

Or see this region's nucleotide sequence