Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17550

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17540 and BWI76_RS17545 are separated by 113 nucleotidesBWI76_RS17545 and BWI76_RS17550 overlap by 4 nucleotidesBWI76_RS17550 and BWI76_RS17555 are separated by 510 nucleotides BWI76_RS17540: BWI76_RS17540 - chlorohydrolase/aminohydrolase, at 3,639,291 to 3,640,628 _RS17540 BWI76_RS17545: BWI76_RS17545 - oxidoreductase, 4Fe-4S subunit, at 3,640,742 to 3,641,218 _RS17545 BWI76_RS17550: BWI76_RS17550 - oxidoreductase (Fe-S)-binding subunit, at 3,641,215 to 3,643,155 _RS17550 BWI76_RS17555: BWI76_RS17555 - permease, at 3,643,666 to 3,645,138 _RS17555 Position (kb) 3641 3642 3643 3644Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3640.267 kb on - strand, within BWI76_RS17540at 3640.394 kb on + strand, within BWI76_RS17540at 3640.394 kb on + strand, within BWI76_RS17540at 3640.413 kb on - strand, within BWI76_RS17540at 3641.156 kb on + strand, within BWI76_RS17545at 3641.221 kb on - strandat 3641.395 kb on + strandat 3641.408 kb on - strandat 3641.577 kb on - strand, within BWI76_RS17550at 3641.820 kb on + strand, within BWI76_RS17550at 3642.195 kb on + strand, within BWI76_RS17550at 3642.320 kb on + strand, within BWI76_RS17550at 3642.477 kb on + strand, within BWI76_RS17550at 3642.625 kb on - strand, within BWI76_RS17550at 3642.698 kb on + strand, within BWI76_RS17550at 3642.774 kb on - strand, within BWI76_RS17550at 3642.922 kb on + strand, within BWI76_RS17550at 3642.992 kb on + strandat 3643.077 kb on - strandat 3643.096 kb on - strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.098 kb on + strandat 3643.101 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.106 kb on - strandat 3643.113 kb on + strandat 3643.113 kb on + strandat 3643.171 kb on + strandat 3643.180 kb on - strandat 3643.180 kb on - strandat 3643.180 kb on - strandat 3643.192 kb on - strandat 3643.243 kb on - strandat 3643.334 kb on + strandat 3643.334 kb on + strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.342 kb on - strandat 3643.397 kb on + strandat 3643.397 kb on - strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.531 kb on + strandat 3643.538 kb on - strandat 3643.539 kb on - strandat 3643.539 kb on - strandat 3643.539 kb on - strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.543 kb on + strandat 3643.549 kb on - strandat 3643.551 kb on - strandat 3643.551 kb on - strandat 3643.553 kb on + strandat 3643.561 kb on - strandat 3643.567 kb on + strandat 3643.573 kb on - strandat 3643.591 kb on - strandat 3643.621 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.626 kb on + strandat 3643.634 kb on - strandat 3643.636 kb on - strandat 3643.636 kb on - strandat 3643.645 kb on - strandat 3643.646 kb on + strandat 3643.659 kb on - strandat 3643.848 kb on - strand, within BWI76_RS17555at 3643.854 kb on + strand, within BWI76_RS17555at 3643.933 kb on - strand, within BWI76_RS17555at 3643.942 kb on + strand, within BWI76_RS17555at 3643.968 kb on + strandat 3644.023 kb on + strand, within BWI76_RS17555at 3644.084 kb on - strand, within BWI76_RS17555

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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3,640,267 - BWI76_RS17540 0.73 -0.1
3,640,394 + BWI76_RS17540 0.82 -0.0
3,640,394 + BWI76_RS17540 0.82 +0.3
3,640,413 - BWI76_RS17540 0.84 +0.3
3,641,156 + BWI76_RS17545 0.87 -1.0
3,641,221 - -0.8
3,641,395 + +0.0
3,641,408 - -0.7
3,641,577 - BWI76_RS17550 0.19 -0.8
3,641,820 + BWI76_RS17550 0.31 +3.2
3,642,195 + BWI76_RS17550 0.50 +0.6
3,642,320 + BWI76_RS17550 0.57 -0.1
3,642,477 + BWI76_RS17550 0.65 -0.2
3,642,625 - BWI76_RS17550 0.73 -0.6
3,642,698 + BWI76_RS17550 0.76 -0.1
3,642,774 - BWI76_RS17550 0.80 +1.0
3,642,922 + BWI76_RS17550 0.88 -0.2
3,642,992 + +0.4
3,643,077 - -0.2
3,643,096 - -0.9
3,643,098 + +0.6
3,643,098 + -0.2
3,643,098 + +0.1
3,643,098 + -0.2
3,643,098 + +0.7
3,643,098 + -1.2
3,643,101 - -0.5
3,643,106 - +0.4
3,643,106 - -0.4
3,643,106 - -0.4
3,643,106 - -0.2
3,643,113 + +0.6
3,643,113 + +0.2
3,643,171 + -0.3
3,643,180 - +0.4
3,643,180 - +1.7
3,643,180 - +0.0
3,643,192 - -0.2
3,643,243 - +2.2
3,643,334 + -0.6
3,643,334 + -0.4
3,643,342 - +0.3
3,643,342 - -0.1
3,643,342 - +0.4
3,643,342 - -0.1
3,643,397 + -0.3
3,643,397 - +0.7
3,643,531 + -0.7
3,643,531 + +0.3
3,643,531 + +3.3
3,643,531 + -0.5
3,643,538 - -0.1
3,643,539 - -1.0
3,643,539 - -1.3
3,643,539 - +0.3
3,643,543 + -0.7
3,643,543 + -0.7
3,643,543 + -0.3
3,643,543 + +0.5
3,643,543 + +0.7
3,643,543 + -0.4
3,643,543 + +0.0
3,643,543 + -1.6
3,643,543 + +1.6
3,643,543 + -0.7
3,643,549 - -2.3
3,643,551 - +0.3
3,643,551 - +0.9
3,643,553 + -0.1
3,643,561 - -0.9
3,643,567 + -0.9
3,643,573 - -0.1
3,643,591 - -2.3
3,643,621 + -0.8
3,643,626 + -0.1
3,643,626 + +0.1
3,643,626 + -0.0
3,643,626 + +0.3
3,643,626 + +0.5
3,643,634 - -0.0
3,643,636 - +1.6
3,643,636 - +0.6
3,643,645 - -0.8
3,643,646 + -0.2
3,643,659 - +0.8
3,643,848 - BWI76_RS17555 0.12 +1.3
3,643,854 + BWI76_RS17555 0.13 +0.1
3,643,933 - BWI76_RS17555 0.18 +0.7
3,643,942 + BWI76_RS17555 0.19 +0.1
3,643,968 + +0.2
3,644,023 + BWI76_RS17555 0.24 -0.5
3,644,084 - BWI76_RS17555 0.28 -0.3

Or see this region's nucleotide sequence