Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17540 and BWI76_RS17545 are separated by 113 nucleotides BWI76_RS17545 and BWI76_RS17550 overlap by 4 nucleotides BWI76_RS17550 and BWI76_RS17555 are separated by 510 nucleotides
BWI76_RS17540: BWI76_RS17540 - chlorohydrolase/aminohydrolase, at 3,639,291 to 3,640,628
_RS17540
BWI76_RS17545: BWI76_RS17545 - oxidoreductase, 4Fe-4S subunit, at 3,640,742 to 3,641,218
_RS17545
BWI76_RS17550: BWI76_RS17550 - oxidoreductase (Fe-S)-binding subunit, at 3,641,215 to 3,643,155
_RS17550
BWI76_RS17555: BWI76_RS17555 - permease, at 3,643,666 to 3,645,138
_RS17555
Position (kb)
3641
3642
3643
3644 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3640.267 kb on - strand, within BWI76_RS17540 at 3640.394 kb on + strand, within BWI76_RS17540 at 3640.394 kb on + strand, within BWI76_RS17540 at 3640.413 kb on - strand, within BWI76_RS17540 at 3641.156 kb on + strand, within BWI76_RS17545 at 3641.221 kb on - strand at 3641.395 kb on + strand at 3641.408 kb on - strand at 3641.577 kb on - strand, within BWI76_RS17550 at 3641.820 kb on + strand, within BWI76_RS17550 at 3642.195 kb on + strand, within BWI76_RS17550 at 3642.320 kb on + strand, within BWI76_RS17550 at 3642.477 kb on + strand, within BWI76_RS17550 at 3642.625 kb on - strand, within BWI76_RS17550 at 3642.698 kb on + strand, within BWI76_RS17550 at 3642.774 kb on - strand, within BWI76_RS17550 at 3642.922 kb on + strand, within BWI76_RS17550 at 3642.992 kb on + strand at 3643.077 kb on - strand at 3643.096 kb on - strand at 3643.098 kb on + strand at 3643.098 kb on + strand at 3643.098 kb on + strand at 3643.098 kb on + strand at 3643.098 kb on + strand at 3643.098 kb on + strand at 3643.101 kb on - strand at 3643.106 kb on - strand at 3643.106 kb on - strand at 3643.106 kb on - strand at 3643.106 kb on - strand at 3643.113 kb on + strand at 3643.113 kb on + strand at 3643.171 kb on + strand at 3643.180 kb on - strand at 3643.180 kb on - strand at 3643.180 kb on - strand at 3643.192 kb on - strand at 3643.243 kb on - strand at 3643.334 kb on + strand at 3643.334 kb on + strand at 3643.342 kb on - strand at 3643.342 kb on - strand at 3643.342 kb on - strand at 3643.342 kb on - strand at 3643.397 kb on + strand at 3643.397 kb on - strand at 3643.531 kb on + strand at 3643.531 kb on + strand at 3643.531 kb on + strand at 3643.531 kb on + strand at 3643.538 kb on - strand at 3643.539 kb on - strand at 3643.539 kb on - strand at 3643.539 kb on - strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.543 kb on + strand at 3643.549 kb on - strand at 3643.551 kb on - strand at 3643.551 kb on - strand at 3643.553 kb on + strand at 3643.561 kb on - strand at 3643.567 kb on + strand at 3643.573 kb on - strand at 3643.591 kb on - strand at 3643.621 kb on + strand at 3643.626 kb on + strand at 3643.626 kb on + strand at 3643.626 kb on + strand at 3643.626 kb on + strand at 3643.626 kb on + strand at 3643.634 kb on - strand at 3643.636 kb on - strand at 3643.636 kb on - strand at 3643.645 kb on - strand at 3643.646 kb on + strand at 3643.659 kb on - strand at 3643.848 kb on - strand, within BWI76_RS17555 at 3643.854 kb on + strand, within BWI76_RS17555 at 3643.933 kb on - strand, within BWI76_RS17555 at 3643.942 kb on + strand, within BWI76_RS17555 at 3643.968 kb on + strand at 3644.023 kb on + strand, within BWI76_RS17555 at 3644.084 kb on - strand, within BWI76_RS17555
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 3,640,267 - BWI76_RS17540 0.73 -0.1 3,640,394 + BWI76_RS17540 0.82 -0.0 3,640,394 + BWI76_RS17540 0.82 +0.3 3,640,413 - BWI76_RS17540 0.84 +0.3 3,641,156 + BWI76_RS17545 0.87 -1.0 3,641,221 - -0.8 3,641,395 + +0.0 3,641,408 - -0.7 3,641,577 - BWI76_RS17550 0.19 -0.8 3,641,820 + BWI76_RS17550 0.31 +3.2 3,642,195 + BWI76_RS17550 0.50 +0.6 3,642,320 + BWI76_RS17550 0.57 -0.1 3,642,477 + BWI76_RS17550 0.65 -0.2 3,642,625 - BWI76_RS17550 0.73 -0.6 3,642,698 + BWI76_RS17550 0.76 -0.1 3,642,774 - BWI76_RS17550 0.80 +1.0 3,642,922 + BWI76_RS17550 0.88 -0.2 3,642,992 + +0.4 3,643,077 - -0.2 3,643,096 - -0.9 3,643,098 + +0.6 3,643,098 + -0.2 3,643,098 + +0.1 3,643,098 + -0.2 3,643,098 + +0.7 3,643,098 + -1.2 3,643,101 - -0.5 3,643,106 - +0.4 3,643,106 - -0.4 3,643,106 - -0.4 3,643,106 - -0.2 3,643,113 + +0.6 3,643,113 + +0.2 3,643,171 + -0.3 3,643,180 - +0.4 3,643,180 - +1.7 3,643,180 - +0.0 3,643,192 - -0.2 3,643,243 - +2.2 3,643,334 + -0.6 3,643,334 + -0.4 3,643,342 - +0.3 3,643,342 - -0.1 3,643,342 - +0.4 3,643,342 - -0.1 3,643,397 + -0.3 3,643,397 - +0.7 3,643,531 + -0.7 3,643,531 + +0.3 3,643,531 + +3.3 3,643,531 + -0.5 3,643,538 - -0.1 3,643,539 - -1.0 3,643,539 - -1.3 3,643,539 - +0.3 3,643,543 + -0.7 3,643,543 + -0.7 3,643,543 + -0.3 3,643,543 + +0.5 3,643,543 + +0.7 3,643,543 + -0.4 3,643,543 + +0.0 3,643,543 + -1.6 3,643,543 + +1.6 3,643,543 + -0.7 3,643,549 - -2.3 3,643,551 - +0.3 3,643,551 - +0.9 3,643,553 + -0.1 3,643,561 - -0.9 3,643,567 + -0.9 3,643,573 - -0.1 3,643,591 - -2.3 3,643,621 + -0.8 3,643,626 + -0.1 3,643,626 + +0.1 3,643,626 + -0.0 3,643,626 + +0.3 3,643,626 + +0.5 3,643,634 - -0.0 3,643,636 - +1.6 3,643,636 - +0.6 3,643,645 - -0.8 3,643,646 + -0.2 3,643,659 - +0.8 3,643,848 - BWI76_RS17555 0.12 +1.3 3,643,854 + BWI76_RS17555 0.13 +0.1 3,643,933 - BWI76_RS17555 0.18 +0.7 3,643,942 + BWI76_RS17555 0.19 +0.1 3,643,968 + +0.2 3,644,023 + BWI76_RS17555 0.24 -0.5 3,644,084 - BWI76_RS17555 0.28 -0.3
Or see this region's nucleotide sequence